View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3530_low_4 (Length: 328)
Name: NF3530_low_4
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3530_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 3903588 - 3903275
Alignment:
| Q |
5 |
gaggagcagagagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttc--------tttatgagaattggttcaaca |
96 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||| | |
|
|
| T |
3903588 |
gaggaacagaaagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttcaacaagtgtgtatatatatttcttcaaaa |
3903489 |
T |
|
| Q |
97 |
agtgtgtatacatatttgtcgctgatcctcttcttgtttcttgtagaataattgatacaatcgaatagttattgcaagctttgcatgtatcacctttcta |
196 |
Q |
| |
|
| |||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3903488 |
aaagtgttga--tatttgtcgctgatccttttcttgtttcttgtagaataattgttacaatcgaatagttattgcaagctttgcatgtatcacctttcta |
3903391 |
T |
|
| Q |
197 |
tcttgggatattcattatttattttcttgtctagtagtactcttgcttctccctcttgttgtatatatcaaacttagtatgtttttccattttacgactt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3903390 |
tcttgggatattcattatttattttcttgtctagtagtactcttgcttctccctcttgttgtatatatcaaacttagtatgtgtttccattttacgactt |
3903291 |
T |
|
| Q |
297 |
cacctcacaattatat |
312 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
3903290 |
cagctcacaattatat |
3903275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 3906217 - 3906089
Alignment:
| Q |
133 |
tttcttgtagaataattgatacaatcgaatagttattgcaagctttgcatgtatcacctttctatcttgggatattcattatttattttcttgtctagta |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
3906217 |
tttcttgtagaaaaattgatacaatcgaatagtttttgcaagctttccatgtatcacctttctatcttgggatattcattatttattttcttgtcca-ta |
3906119 |
T |
|
| Q |
233 |
gtactcttgcttctccctcttgttgtatat |
262 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
3906118 |
gtactgttgcttctccctcttgttgtatat |
3906089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 3906406 - 3906310
Alignment:
| Q |
5 |
gaggagcagagagatggtgtagaatttaggagaagaggaagtcatttcctaatgtagttgatattttgttctttatgagaattggttcaacaagtgt |
101 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
3906406 |
gaggaacagaaagatgatgtagaatttaggagaagaggaagccatttcctaatgtagatgatattttgttcttcatgagaaatggttcaacaagtgt |
3906310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 3900438 - 3900277
Alignment:
| Q |
147 |
attgatacaatcgaatagttattgcaagctttgcatgtatcacctttctatcttgggatattcattatttattttcttgtctagtagtactcttgcttct |
246 |
Q |
| |
|
|||||||||| |||| |||| |||||| ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
3900438 |
attgatacaaccgaagagttgttgcaaactttgcatgtatcaccttt-ta-cttggaatattcattattt-ttttcttgtctagtagtactctttcttca |
3900342 |
T |
|
| Q |
247 |
ccctcttgttgtatatatcaaacttagtatgtttttccattttacgacttcacctcacaattata |
311 |
Q |
| |
|
| ||||||||| ||||||||||| |||| | | ||||||| ||||||| |||||||||||| |
|
|
| T |
3900341 |
cactcttgttgcgtatatcaaactctgtatttgaattcattttatgacttcaactcacaattata |
3900277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 3876539 - 3876444
Alignment:
| Q |
11 |
cagagagatggtgtagaatttaggagaagaggaagtcat---ttcctaatgtagttgatattttgttctttatgagaattggttcaacaagtgtgt |
103 |
Q |
| |
|
|||| |||||| |||||||||||| | |||||||| ||| | | ||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3876539 |
cagaaagatggcgtagaatttaggcgtagaggaagccatgcttgcttaatgtaaatgatgttttgttctttatgagaattgcttcaacaagtgtgt |
3876444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University