View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3530_low_5 (Length: 254)

Name: NF3530_low_5
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3530_low_5
NF3530_low_5
[»] chr1 (25 HSPs)
chr1 (119-243)||(10227712-10227836)
chr1 (119-243)||(26552132-26552256)
chr1 (118-210)||(23346418-23346510)
chr1 (119-210)||(48871410-48871501)
chr1 (123-196)||(19059378-19059451)
chr1 (117-210)||(28217692-28217785)
chr1 (119-211)||(50892963-50893055)
chr1 (116-185)||(10227910-10227979)
chr1 (128-212)||(19059549-19059633)
chr1 (120-211)||(39669230-39669321)
chr1 (119-211)||(41833874-41833966)
chr1 (121-196)||(26551992-26552067)
chr1 (119-188)||(42180571-42180639)
chr1 (119-188)||(48752589-48752657)
chr1 (120-206)||(50904992-50905080)
chr1 (146-210)||(7062034-7062098)
chr1 (117-188)||(28217528-28217598)
chr1 (119-185)||(48871247-48871312)
chr1 (119-185)||(50893161-50893226)
chr1 (119-188)||(41834071-41834139)
chr1 (116-188)||(7062192-7062263)
chr1 (119-188)||(4156892-4156960)
chr1 (120-188)||(50905107-50905175)
chr1 (128-184)||(23346620-23346675)
chr1 (119-211)||(42180744-42180834)
[»] chr2 (22 HSPs)
chr2 (116-243)||(31860225-31860352)
chr2 (116-212)||(13280006-13280102)
chr2 (119-243)||(42028578-42028702)
chr2 (118-212)||(2059655-2059749)
chr2 (119-212)||(16115046-16115139)
chr2 (116-192)||(36059278-36059354)
chr2 (117-212)||(7317806-7317901)
chr2 (119-196)||(42028765-42028842)
chr2 (117-201)||(15332844-15332928)
chr2 (119-211)||(31470587-31470678)
chr2 (119-188)||(31860079-31860148)
chr2 (116-196)||(7317632-7317712)
chr2 (119-210)||(38086140-38086231)
chr2 (119-191)||(38085967-38086038)
chr2 (119-196)||(2059490-2059567)
chr2 (120-185)||(3671822-3671886)
chr2 (119-180)||(13279840-13279901)
chr2 (119-196)||(16115231-16115308)
chr2 (119-210)||(3671996-3672087)
chr2 (119-185)||(31470776-31470841)
chr2 (119-176)||(15330449-15330505)
chr2 (118-148)||(36059247-36059277)
[»] chr5 (30 HSPs)
chr5 (119-243)||(791592-791716)
chr5 (116-243)||(26534638-26534765)
chr5 (121-212)||(8323879-8323970)
chr5 (119-243)||(130388-130512)
chr5 (119-211)||(33377820-33377912)
chr5 (117-212)||(42630878-42630973)
chr5 (117-211)||(5146675-5146769)
chr5 (116-210)||(8489120-8489214)
chr5 (119-196)||(26534506-26534583)
chr5 (119-211)||(13823320-13823412)
chr5 (119-210)||(6518203-6518294)
chr5 (119-210)||(19898927-19899018)
chr5 (118-196)||(130253-130331)
chr5 (119-196)||(8323707-8323784)
chr5 (116-210)||(35454623-35454716)
chr5 (119-211)||(228717-228809)
chr5 (119-210)||(40881792-40881881)
chr5 (119-196)||(42630711-42630788)
chr5 (117-187)||(14069859-14069928)
chr5 (119-188)||(14388515-14388583)
chr5 (119-188)||(35454451-35454519)
chr5 (122-188)||(19897228-19897293)
chr5 (136-210)||(40881992-40882066)
chr5 (119-176)||(791810-791867)
chr5 (119-187)||(5146504-5146571)
chr5 (116-182)||(6518404-6518469)
chr5 (117-203)||(13823148-13823233)
chr5 (134-207)||(27319643-27319716)
chr5 (122-180)||(228987-229044)
chr5 (119-155)||(30102525-30102561)
[»] chr6 (8 HSPs)
chr6 (120-212)||(33022339-33022431)
chr6 (119-211)||(21389021-21389113)
chr6 (118-196)||(33022163-33022241)
chr6 (120-211)||(7789842-7789933)
chr6 (116-188)||(21389217-21389288)
chr6 (130-201)||(7789678-7789748)
chr6 (120-209)||(28472535-28472624)
chr6 (120-209)||(29859723-29859813)
[»] chr4 (13 HSPs)
chr4 (119-243)||(40534103-40534227)
chr4 (119-243)||(3102680-3102804)
chr4 (115-196)||(3102536-3102617)
chr4 (119-196)||(9231580-9231657)
chr4 (116-210)||(37177799-37177893)
chr4 (120-196)||(13690216-13690292)
chr4 (118-210)||(18936850-18936942)
chr4 (116-196)||(40533960-40534040)
chr4 (138-243)||(9231720-9231825)
chr4 (116-204)||(18381488-18381576)
chr4 (118-188)||(11147013-11147083)
chr4 (117-185)||(5121005-5121073)
chr4 (117-199)||(18936674-18936755)
[»] chr3 (13 HSPs)
chr3 (118-212)||(33214442-33214536)
chr3 (119-212)||(27073079-27073172)
chr3 (119-212)||(36274120-36274212)
chr3 (119-211)||(36635410-36635502)
chr3 (115-210)||(19580483-19580578)
chr3 (118-196)||(33214626-33214704)
chr3 (115-196)||(10598804-10598885)
chr3 (116-196)||(36274312-36274392)
chr3 (119-196)||(33219072-33219149)
chr3 (119-181)||(10599000-10599062)
chr3 (118-180)||(27072912-27072974)
chr3 (119-210)||(11651000-11651091)
chr3 (122-187)||(36635241-36635305)
[»] chr8 (14 HSPs)
chr8 (1-118)||(35508295-35508412)
chr8 (119-243)||(37994848-37994972)
chr8 (118-210)||(41539769-41539861)
chr8 (119-211)||(2814416-2814508)
chr8 (117-211)||(397177-397271)
chr8 (119-196)||(37994708-37994785)
chr8 (116-196)||(44036811-44036891)
chr8 (116-191)||(41539963-41540037)
chr8 (119-199)||(14193509-14193588)
chr8 (117-196)||(2814241-2814319)
chr8 (117-210)||(14193322-14193414)
chr8 (135-212)||(25101746-25101823)
chr8 (119-196)||(397007-397083)
chr8 (175-212)||(44036985-44037022)
[»] chr7 (10 HSPs)
chr7 (119-211)||(7298635-7298727)
chr7 (116-212)||(19805585-19805681)
chr7 (119-211)||(40521188-40521280)
chr7 (119-196)||(19804797-19804874)
chr7 (116-187)||(7298833-7298903)
chr7 (117-188)||(40521014-40521084)
chr7 (122-188)||(46567960-46568025)
chr7 (119-188)||(16979613-16979681)
chr7 (119-188)||(28949001-28949069)
chr7 (145-211)||(46568130-46568196)
[»] scaffold0214 (2 HSPs)
scaffold0214 (123-212)||(11630-11719)
scaffold0214 (119-196)||(11814-11891)
[»] scaffold0135 (2 HSPs)
scaffold0135 (119-196)||(37446-37523)
scaffold0135 (138-243)||(37586-37691)
[»] scaffold0140 (2 HSPs)
scaffold0140 (118-187)||(15846-15915)
scaffold0140 (121-150)||(16045-16074)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 10227712 - 10227836
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 10227811  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||||||||||||||| ||||||    
T  10227812 ataaattaactagtcctttctctct 10227836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 26552256 - 26552132
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 26552157  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  26552156 ataaatcaactagtcctttctctct 26552132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 23346418 - 23346510
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| || |||| |||||||||||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 48871501 - 48871410
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||| ||||||| |||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
Q  123 aattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 28217785 - 28217692
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||| |||||||||||||    
T  28217785 aagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 50892963 - 50893055
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    |||||||| |||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 10227979 - 10227910
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  10227979 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 19059633 - 19059549
Alignment:
Q  128 ttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||||||||||||||| || |||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattat 19059549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 39669321 - 39669230
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    |||||||||||||||| ||||||| ||||||| ||| |||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta 39669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 41833874 - 41833966
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||| ||| |||||| |||| ||| ||| |||||| ||||||||||||||||||||||||| || |||| ||||||||||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta 41833966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
Q  121 gaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| ||| ||||||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 42180571 - 42180639
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtc 42180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 48752657 - 48752589
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 48752589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 50904992 - 50905080
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacatac--catccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaat 206  Q
    |||||||||||||||||||||||||||| |||   |||  ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat 50905080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 7062034 - 7062098
Alignment:
Q  146 aacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  7062034 aacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 28217528 - 28217598
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||||||||| |||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||    
T  28217528 aagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc 28217598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 48871247 - 48871312
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    |||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacac 48871312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 50893226 - 50893161
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacac 50893161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 41834139 - 41834071
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||||||||||||||||||||||| |||| || |||  |||||||||||||||||||||||||||||||    
T  41834139 gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtc 41834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 7062263 - 7062192
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||||||||| ||||||||||||||||||||| || |||  |||||||||||||||||||| ||||||||||    
T  7062263 aaagagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 4156892 - 4156960
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||| ||||||||| || ||| |||||||| || ||||||||||||||||||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtc 4156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||||||||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
Q  128 ttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgaca 184  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 23346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 42180834 - 42180744
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||| | | |||||| |||| ||| ||| ||||||||||||||| ||||||||||||| || || |||| ||||||||||||||    
T  42180834 gagaaattcttgtat-gaaacgaatctaa-atatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta 42180744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 31860352 - 31860225
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnn 215  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       
T  31860352 aaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaa 31860253  T
Q  216 nnnntaaattaactagtccttcctctct 243  Q
        ||||||||||||||||| ||||||    
T  31860252 aaaataaattaactagtcctttctctct 31860225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 13280102 - 13280006
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13280102 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattat 13280006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 42028578 - 42028702
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 42028677  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  42028678 ttaaatcaactagtcctttctctct 42028702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 2059749 - 2059655
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 2059655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 16115046 - 16115139
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 16115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 36059354 - 36059278
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttg 192  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36059354 aaagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 7317901 - 7317806
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||    
T  7317901 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattat 7317806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 42028842 - 42028765
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 15332928 - 15332844
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt 201  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| ||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 31470587 - 31470678
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 7317632 - 7317712
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||| | ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||    
T  7317632 aaagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 38086231 - 38086140
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||| ||||||||| || ||||||||||| ||| ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt 38086140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 38085967 - 38086038
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgtt 191  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 38086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 2059490 - 2059567
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||| ||||||| || |||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacat 180  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||||||| ||||| ||||||| || |||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 3672087 - 3671996
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||| || ||||||||| |||| ||| |||  ||||||| |||||||||||| || ||||||| ||||||| |||||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt 3671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 31470841 - 31470776
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||  |||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacac 31470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaa 176  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 148
Target Start/End: Original strand, 36059247 - 36059277
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaac 148  Q
    |||||||||||||||||||||||||||||||    
T  36059247 agagaaattcttgtgtaggaacgaacctaac 36059277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 791592 - 791716
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 791691  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||||||||||||||| ||||||    
T  791692 ataaattaactagtcctttctctct 791716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 26534765 - 26534638
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnn 215  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  26534765 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaa 26534666  T
Q  216 nnnntaaattaactagtccttcctctct 243  Q
        ||||| ||||||||||| ||||||    
T  26534665 aaaataaatcaactagtcctttctctct 26534638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 8323970 - 8323879
Alignment:
Q  121 gaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 8323879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 130512 - 130388
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    ||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattataaaaaa 130413  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  130412 ataaatcaactagtcctttctctct 130388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 33377912 - 33377820
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 42630973 - 42630878
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||| ||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattat 42630878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 5146769 - 5146675
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 8489120 - 8489214
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  8489120 aaagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13823412 - 13823320
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||||||||| ||||||| |||  ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 6518203 - 6518294
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  || ||| ||||||| |||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt 6518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 19899018 - 19898927
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 130253 - 130331
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 8323707 - 8323784
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 35454716 - 35454623
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||  || |||||||||    
T  35454716 aaagaaaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatt 35454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 228717 - 228809
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||  ||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta 228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 40881792 - 40881881
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||| |||||||||||||||||||||||   || ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 40881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||| || |||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 14069859 - 14069928
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgt 187  Q
    |||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 14388583 - 14388515
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 35454451 - 35454519
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 19897228 - 19897293
Alignment:
Q  122 aaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 19897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 40882066 - 40881992
Alignment:
Q  136 gaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||| |||||||| ||| ||||||||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt 40881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaa 176  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 5146504 - 5146571
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgt 187  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 6518469 - 6518404
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatga 182  Q
    |||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||| ||||    
T  6518469 aaagagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 13823148 - 13823233
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaa 203  Q
    |||||||||||||||||||||||||||||||| || ||| | || |||||| ||| |||||||||||||||  || |||||||||||    
T  13823148 aagagaaattcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgtattttttttcttttaa 13823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 27319716 - 27319643
Alignment:
Q  134 aggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaata 207  Q
    |||||| || |||||||| ||| ||||||||||||||||||||| |||| || || ||||||| ||||||||||    
T  27319716 aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata 27319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  122 aaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacat 180  Q
    ||||| |||||||| ||||||| |||| || ||| ||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 30102561 - 30102525
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccat 155  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  30102561 gagaaattcttgcgtaggaacgaaccgaacataccat 30102525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 33022431 - 33022339
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33022339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 21389021 - 21389113
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 33022163 - 33022241
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 7789933 - 7789842
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta 7789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 21389288 - 21389217
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    ||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  21389288 aaagataaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 21389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 7789678 - 7789748
Alignment:
Q  130 gtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttctttt 201  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| ||||||| ||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataat 209  Q
    ||||||| || ||||||||||||||||| ||| |||  ||| ||||||||||||||| ||| ||||||  || |||||||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 29859813 - 29859723
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacg-tcgttgttttcttttaaaataat 209  Q
    ||||||| || ||||||||||||||||| ||| |||  ||| ||||||||||||||| ||| ||||| |  || |||||||||||||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttcttttaaaataat 29859723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 40534227 - 40534103
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 40534128  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  40534127 ttaaatcaactagtcctttctctct 40534103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 3102804 - 3102680
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataaaaaa 3102705  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  3102704 ttaaatcaactagtcctttctctct 3102680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 3102536 - 3102617
Alignment:
Q  115 taaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  3102536 taaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 9231580 - 9231657
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 37177893 - 37177799
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  37177893 aaagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
Q  120 agaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 18936942 - 18936850
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 40533960 - 40534040
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||    
T  40533960 aaagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 9231825 - 9231720
Alignment:
Q  138 acgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaattaactagtccttc 237  Q
    ||||||||||| || |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||| |||||||||||     
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 9231726  T
Q  238 ctctct 243  Q
    ||||||    
T  9231725 ctctct 9231720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 18381576 - 18381488
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaa 204  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||||| || ||||||| |||||||    
T  18381576 aaagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 11147013 - 11147083
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 5121073 - 5121005
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacac 185  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||    
T  5121073 aagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 18936674 - 18936755
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt 199  Q
    |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||||||||| ||||| || |||||||    
T  18936674 aagagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttctt 18936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 33214442 - 33214536
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33214536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 27073172 - 27073079
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 27073079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 36274120 - 36274212
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 36274212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 36635502 - 36635410
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 19580578 - 19580483
Alignment:
Q  115 taaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  19580578 taaagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 33214704 - 33214626
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 10598804 - 10598885
Alignment:
Q  115 taaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    ||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  10598804 taaagggaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 36274392 - 36274312
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||| |||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  36274392 aaagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 33219072 - 33219149
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  |||| |||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt 33219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatg 181  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacat 180  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 11651000 - 11651091
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    ||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||| |  || ||||||| |||||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatt 11651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
Q  122 aaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgt 187  Q
    ||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 35508412 - 35508295
Alignment:
Q  1 tattgaagttatgtctgagttttatattattcagattctcgagttgttgaatgtataattaattgaatatcctcatcatttgagttaattttcaattgag 100  Q
    |||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||    
T  35508412 tattgaagttatatccaagttttatattattcagattctcaagttgttgaatgtatacttgattgaacatccttatcatttgagttaattttcaattgag 35508313  T
Q  101 atttgagatatatctaaa 118  Q
    ||||||||||||||||||    
T  35508312 atttgagatatatctaaa 35508295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 37994972 - 37994848
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnn 218  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 37994873  T
Q  219 ntaaattaactagtccttcctctct 243  Q
     ||||| ||||||||||| ||||||    
T  37994872 ttaaatcaactagtcctttctctct 37994848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 41539769 - 41539861
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 2814508 - 2814416
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 397271 - 397177
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  397271 aagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 37994708 - 37994785
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 44036811 - 44036891
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  44036811 aaagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 41540037 - 41539963
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgtt 191  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  41540037 aaagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 14193588 - 14193509
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttctt 199  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| || |||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttctt 14193509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 2814241 - 2814319
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||| ||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt 2814319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 14193322 - 14193414
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatt 210  Q
    |||||||||| |||| |||||||||||||||||||  ||  |||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 25101746 - 25101823
Alignment:
Q  135 ggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||| || ||| ||| ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat 25101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 397007 - 397083
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||| ||||||||||||||| || ||| ||||||||||| |||||||||||| |||||| ||| ||||    
T  397007 gagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgttgttttttt 397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 44037022 - 44036985
Alignment:
Q  175 aaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44037022 aaacatgacacgtcgttgttttcttttaaaataattat 44036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 7298635 - 7298727
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 7298727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 19805681 - 19805585
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||||||||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  19805681 aaagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattat 19805585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 40521280 - 40521188
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 19804797 - 19804874
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||| ||||| ||||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 7298903 - 7298833
Alignment:
Q  116 aaagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgt 187  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||    
T  7298903 aaagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 40521014 - 40521084
Alignment:
Q  117 aagagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 46567960 - 46568025
Alignment:
Q  122 aaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 46568025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 16979681 - 16979613
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||||||||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtc 16979613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 28949069 - 28949001
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtc 188  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 46568196 - 46568130
Alignment:
Q  145 taacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataatta 211  Q
    ||||||| ||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 11630 - 11719
Alignment:
Q  123 aattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 212  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattat 11719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 11891 - 11814
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 37446 - 37523
Alignment:
Q  119 gagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 196  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 37691 - 37586
Alignment:
Q  138 acgaacctaacataccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaattaactagtccttc 237  Q
    ||||||||||| || |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||| |||||||||||     
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtccttt 37592  T
Q  238 ctctct 243  Q
    ||||||    
T  37591 ctctct 37586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 15846 - 15915
Alignment:
Q  118 agagaaattcttgtgtaggaacgaacctaacataccatccttacaaacaacaaattaaaacatgacacgt 187  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  15846 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 16074 - 16045
Alignment:
Q  121 gaaattcttgtgtaggaacgaacctaacat 150  Q
    ||||||||||||||||||||||||||||||    
T  16074 gaaattcttgtgtaggaacgaacctaacat 16045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University