View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3530_low_7 (Length: 234)

Name: NF3530_low_7
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3530_low_7
NF3530_low_7
[»] chr2 (13 HSPs)
chr2 (21-213)||(8412532-8412724)
chr2 (21-213)||(8434630-8434822)
chr2 (21-213)||(8394725-8394917)
chr2 (65-213)||(8406412-8406560)
chr2 (65-213)||(8395012-8395160)
chr2 (10-201)||(8431572-8431758)
chr2 (84-213)||(8417753-8417882)
chr2 (84-213)||(8375339-8375468)
chr2 (84-213)||(8439635-8439764)
chr2 (77-196)||(8368812-8368931)
chr2 (77-196)||(8400479-8400598)
chr2 (77-196)||(8422056-8422175)
chr2 (79-213)||(8404470-8404604)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 8412724 - 8412532
Alignment:
Q  21 acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412724 acacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 8412625  T
Q  121 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412624 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 8412532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 8434822 - 8434630
Alignment:
Q  21 acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434822 acacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 8434723  T
Q  121 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434722 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 8434630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 8394725 - 8394917
Alignment:
Q  21 acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 120  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394725 acacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa 8394824  T
Q  121 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394825 tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctg 8394917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 8406560 - 8406412
Alignment:
Q  65 taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406560 taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt 8406461  T
Q  165 ctattaaactcaataaatatgattactctcactgctacaaccatgtctg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406460 ctattaaactcaataaatatgattactctcactgctacaaccatgtctg 8406412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 8395012 - 8395160
Alignment:
Q  65 taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395012 taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt 8395111  T
Q  165 ctattaaactcaataaatatgattactctcactgctacaaccatgtctg 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8395112 ctattaaactcaataaaaatgattactctcactgctacaaccatgtctg 8395160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 8431758 - 8431572
Alignment:
Q  10 acatcatcaaaacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcaga 109  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||| || ||| ||||||||||  |||| || ||||||||||||||    
T  8431758 acatcaacaaaacagaaatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcaga 8431661  T
Q  110 cagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgcta 201  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  8431660 cagaatagaaatgcatcacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgcta 8431572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 8417882 - 8417753
Alignment:
Q  84 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 183  Q
    |||||||||||||||| ||| || |||||||| |||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || |    
T  8417882 tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaaca 8417783  T
Q  184 tgattactctcactgctacaaccatgtctg 213  Q
    ||||||||||||||||||||||||||||||    
T  8417782 tgattactctcactgctacaaccatgtctg 8417753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 8375339 - 8375468
Alignment:
Q  84 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 183  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || |    
T  8375339 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca 8375438  T
Q  184 tgattactctcactgctacaaccatgtctg 213  Q
    |||||||||| |||||||||||||||||||    
T  8375439 tgattactcttactgctacaaccatgtctg 8375468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 8439764 - 8439635
Alignment:
Q  84 tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata 183  Q
    |||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || |    
T  8439764 tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaaca 8439665  T
Q  184 tgattactctcactgctacaaccatgtctg 213  Q
    |||||||||| |||||||||||||||||||    
T  8439664 tgattactcttactgctacaaccatgtctg 8439635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 8368931 - 8368812
Alignment:
Q  77 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 176  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8368931 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 8368832  T
Q  177 ataaatatgattactctcac 196  Q
    || || ||||| ||||||||    
T  8368831 atcaacatgatcactctcac 8368812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 8400479 - 8400598
Alignment:
Q  77 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 176  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8400479 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 8400578  T
Q  177 ataaatatgattactctcac 196  Q
    || || ||||| ||||||||    
T  8400579 atcaacatgatcactctcac 8400598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 8422056 - 8422175
Alignment:
Q  77 tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca 176  Q
    ||||||||||||| |  | ||| ||||||| |||||||||||||||||||| |||||||||||||||||  | || |||||||  ||||||||||||||     
T  8422056 tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc 8422155  T
Q  177 ataaatatgattactctcac 196  Q
    || || ||||| ||||||||    
T  8422156 atcaacatgatcactctcac 8422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 8404604 - 8404470
Alignment:
Q  79 aactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaat 178  Q
    ||||||||||| | | ||| ||||||||||||||||| ||||||||| | ||| | ||  |||||||| |||| ||||| |  ||| |||||||||| ||    
T  8404604 aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat 8404505  T
Q  179 aaatatgattactctcactgctacaaccatgtctg 213  Q
     || ||||| || ||||| ||| |||| |||||||    
T  8404504 caacatgataacactcacagcttcaacaatgtctg 8404470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University