View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3531_low_1 (Length: 839)
Name: NF3531_low_1
Description: NF3531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3531_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 268 - 711
Target Start/End: Complemental strand, 42325322 - 42324876
Alignment:
| Q |
268 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
364 |
Q |
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| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
|
| Q |
365 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
464 |
Q |
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| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
|
| Q |
465 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatata |
564 |
Q |
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| T |
42325122 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatata |
42325023 |
T |
|
| Q |
565 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
664 |
Q |
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| T |
42325022 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
42324923 |
T |
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| Q |
665 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
711 |
Q |
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| T |
42324922 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 42325590 - 42325363
Alignment:
| Q |
19 |
gataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325590 |
gataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccact |
42325491 |
T |
|
| Q |
119 |
atcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgttttctattatcagacata |
218 |
Q |
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| T |
42325490 |
atcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgttttctattatcagacata |
42325391 |
T |
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| Q |
219 |
ctcacacaaacacgctatgtgtctgtcc |
246 |
Q |
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| T |
42325390 |
ctcacacaaacacgctatgtgtctgtcc |
42325363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 729 - 828
Target Start/End: Complemental strand, 42324848 - 42324749
Alignment:
| Q |
729 |
gatgagagagaatataatgacatattgaaattgtaaaacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
828 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 36278975 - 36278866
Alignment:
| Q |
53 |
atgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttcccttccactatcaacaccaaacccaaagttgagattgatggtg |
152 |
Q |
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||||||||| |||| | |||||||| |||||||| | |||||| ||||||||||| |||||| | | | ||| ||||| |||||| ||||| |||||| |
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| T |
36278975 |
atgaaaatgtctgtcacttacaacactaagcaagtttacaatggtcatgagttttttccttcctcagttaccactaaacctaaagttcagattcatggtg |
36278876 |
T |
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| Q |
153 |
gtgacatgag |
162 |
Q |
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|||| ||||| |
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| T |
36278875 |
gtgatatgag |
36278866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 551
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
502 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
551 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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