View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3531_low_2 (Length: 474)
Name: NF3531_low_2
Description: NF3531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3531_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 1715567 - 1715784
Alignment:
| Q |
16 |
atttttattgttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttgttattggtaccatcc |
115 |
Q |
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| T |
1715567 |
atttttatttttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttgttattggtaccatct |
1715666 |
T |
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| Q |
116 |
tcaatctttgaagtaattgcacccccaaatcctagaatccgtacgcagatgcgctggattgtgctagtagtgtctggttgattgctttggattacgatat |
215 |
Q |
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| T |
1715667 |
tcaatctttgaaataattgcacccccaaatcctagaatccgtacgcagatgcgctggattgtgctagtagtgtctggttgattgctttggattacgatat |
1715766 |
T |
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| Q |
216 |
gtggctctgtacctctag |
233 |
Q |
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|||||||||||||||||| |
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| T |
1715767 |
gtggctctgtacctctag |
1715784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 279 - 452
Target Start/End: Original strand, 1715830 - 1716003
Alignment:
| Q |
279 |
atactaggtcgggttttatggccccattatggttgtttctccgaatataaataagactgtgttgctgttcaaattgacccccttaagaaacgcgaagttt |
378 |
Q |
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| T |
1715830 |
atactaggtcgggtttcatggccccattatggtcgtttctccgaatataaataagattgtgttgctgttcaaattgacccccttaataaacgtgaagttt |
1715929 |
T |
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| Q |
379 |
gaaaaatgatgatgtaaaaaggaaaaacacgaatttgacctatgtaagatgagattcttcccatttttccacta |
452 |
Q |
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| T |
1715930 |
gaaaaatgatgatgtaaaaaggaaaaacacgaatttgacctatgtaagatgagattcttcccatttttccacta |
1716003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 1739720 - 1739586
Alignment:
| Q |
16 |
atttttattgttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttgttattggtaccatcc |
115 |
Q |
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|||||||||||| ||||||| | |||||||| ||||||| |||| ||||||| |||||| ||||||||| | | ||||| |||| ||| |||||||| |
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| T |
1739720 |
atttttattgtttatgattgtacttgaacttgtagcaacatttgtagaagaa---tctccagattttataatagcaccaatcttgtcattcgtaccatct |
1739624 |
T |
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| Q |
116 |
tcaatctttgaagtaattgcacccccaaatcctagaat |
153 |
Q |
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| T |
1739623 |
tcaatcctcgaagcagttgcaccaccaaatcctagaat |
1739586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 1745057 - 1744927
Alignment:
| Q |
16 |
atttttattgttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttgttattggtaccatcc |
115 |
Q |
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|||||||||||| ||||||| |||||||| | ||||| |||| ||||||| ||||||||||| ||| | | ||||| |||||||| ||||||| |
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| T |
1745057 |
atttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaa---tctccaaatttagtaatagcaccaatcttgttattcataccatct |
1744961 |
T |
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| Q |
116 |
tcaatctttgaagtaattgcacccccaaatccta |
149 |
Q |
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|||||| |||||| | ||||||| |||||||||| |
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| T |
1744960 |
tcaatccttgaagcagttgcaccaccaaatccta |
1744927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 1744804 - 1744758
Alignment:
| Q |
107 |
gtaccatcctcaatctttgaagtaattgcacccccaaatcctagaat |
153 |
Q |
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| T |
1744804 |
gtaccatcttcaatccttgaagtaattgcaccaccaaatcctagaat |
1744758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 1739474 - 1739415
Alignment:
| Q |
94 |
aattttgttattggtaccatcctcaatctttgaagtaattgcacccccaaatcctagaat |
153 |
Q |
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|||| ||||||| |||||||| |||||| |||||||| ||| ||| |||||||||||||| |
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| T |
1739474 |
aattctgttatttgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaat |
1739415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 3167745 - 3167638
Alignment:
| Q |
33 |
ttgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttgttattggtaccatcctcaatctttgaagtaat |
132 |
Q |
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|||| ||||||||| ||||||| |||| ||||||| ||||| ||||||| || | | |||||||| ||||| |||||||| || ||| |||||||| | |
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| T |
3167745 |
ttgagtttgaacttgtagcaacatttgtagaagaa---tctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtact |
3167649 |
T |
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| Q |
133 |
tgcacccccaa |
143 |
Q |
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|||||| |||| |
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| T |
3167648 |
tgcaccaccaa |
3167638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 3156574 - 3156653
Alignment:
| Q |
64 |
agaagaatctccaaattttataagaactccaattttgttattggtaccatcctcaatctttgaagtaattgcacccccaa |
143 |
Q |
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|||||||||||| ||||||| || | | || ||||| ||||| |||||||| |||||| |||||||| ||||||| |||| |
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| T |
3156574 |
agaagaatctcctaattttagaatagcacctattttattatttgtaccatcttcaatccttgaagtacttgcaccaccaa |
3156653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 7490841 - 7490928
Alignment:
| Q |
64 |
agaagaatctccaaattttataagaactccaattttgttattggtaccatcctcaatctttgaagtaattgcacccccaaatcctaga |
151 |
Q |
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| T |
7490841 |
agaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttcaattcttgaagtacttgctccaccaaaacctaga |
7490928 |
T |
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