View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3531_low_3 (Length: 279)

Name: NF3531_low_3
Description: NF3531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3531_low_3
NF3531_low_3
[»] chr4 (11 HSPs)
chr4 (1-279)||(9568916-9569194)
chr4 (1-279)||(9582058-9582336)
chr4 (1-279)||(9587753-9588031)
chr4 (1-279)||(9593851-9594129)
chr4 (1-230)||(9574047-9574276)
chr4 (26-279)||(9602660-9602907)
chr4 (1-279)||(54295156-54295437)
chr4 (7-107)||(37895696-37895793)
chr4 (182-279)||(37897850-37897947)
chr4 (67-161)||(37897699-37897796)
chr4 (126-206)||(37895830-37895910)
[»] chr6 (13 HSPs)
chr6 (29-279)||(29012590-29012834)
chr6 (29-271)||(34281670-34281912)
chr6 (29-277)||(29131060-29131308)
chr6 (85-276)||(29145101-29145295)
chr6 (126-279)||(29152205-29152358)
chr6 (29-268)||(29299827-29300069)
chr6 (129-276)||(34258333-34258480)
chr6 (134-276)||(32744939-32745081)
chr6 (126-235)||(23218715-23218824)
chr6 (222-279)||(34278523-34278580)
chr6 (116-162)||(25529001-25529047)
chr6 (222-276)||(29137227-29137281)
chr6 (228-276)||(29124099-29124147)
[»] chr7 (2 HSPs)
chr7 (3-107)||(42446049-42446150)
chr7 (126-276)||(42446187-42446337)
[»] scaffold0134 (1 HSPs)
scaffold0134 (3-276)||(16304-16577)
[»] scaffold0613 (1 HSPs)
scaffold0613 (129-274)||(49-194)
[»] scaffold0054 (2 HSPs)
scaffold0054 (67-107)||(33709-33749)
scaffold0054 (67-107)||(40060-40100)
[»] chr5 (1 HSPs)
chr5 (137-192)||(40544987-40545042)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 9568916 - 9569194
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9568916 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 9569015  T
Q  101 gtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatga 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9569016 gtgaagaagaagaagatagtcaggatggaccatgtttggtatcattttacttgagcaatgagaaattcttcataacacccgttccctcatacttggatga 9569115  T
Q  201 ttgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9569116 ttgtttcgatgttcaagcattgtggataaacttggtggtgttaaacggggccattgcgttgatctcatatcatgaagag 9569194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9582336 - 9582058
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 100  Q
    |||||||||||||||||||||||||||| |  |||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  9582336 actaactcgtggaggatacttgatgtttctagcatgccttgttcattggcacgtattgacggcactcaagtctacatggatggtgtgtgtcattggttgg 9582237  T
Q  101 gtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatga 200  Q
     ||||||||  || ||||  | ||| |||||| || |||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||| |||||    
T  9582236 ctgaagaagttgatgataccctggagggaccatgtgtggtatcattttacttgagcaatgaggaattcttcataacatacataccctcatacttagatga 9582137  T
Q  201 ttgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    |||||||||| ||||  | |||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  9582136 ttgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgcattgatctcatatcatgaagag 9582058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9588031 - 9587753
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 100  Q
    |||||||||||||||||||||||||||| |  |||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  9588031 actaactcgtggaggatacttgatgtttctagcatgccttgttcattggcacgtattgacggcactcaagtctacatggatggtgtgtgtcattggttgg 9587932  T
Q  101 gtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatga 200  Q
     ||||||||  || ||||  | ||| |||||| || |||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||| |||||    
T  9587931 ctgaagaagttgatgataccctggagggaccatgtgtggtatcattttacttgagcaatgaggaattcttcataacatacataccctcatacttagatga 9587832  T
Q  201 ttgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    |||||||||| ||||  | |||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  9587831 ttgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgcattgatctcatatcatgaagag 9587753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9594129 - 9593851
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 100  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  9594129 actaactcgtggaggatacttaatgtttttggcatgccttgttcattggcacgtattgacggcactcaagtctacatggatggtgtgtgtcattggttgg 9594030  T
Q  101 gtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatga 200  Q
     ||||||||  || ||||    ||| |||||| |||||||||| ||||||||||||||||||   ||||||||||||||| | |||||||||||||||||    
T  9594029 ctgaagaagttgatgataccttggagggaccatgtttggtatccttttacttgagcaatgaggtgttcttcataacacccattccctcatacttggatga 9593930  T
Q  201 ttgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    ||||||| || |||| ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||| |||||    
T  9593929 ttgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgcattgatctcatatcataaagag 9593851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9574047 - 9574276
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||| |||||||||||||||| | ||    
T  9574047 actaactcgtggaggatacttgatgtttttgacatgccttattcgttggcaggtattgacggcactcaagtttgcatggatggtgtgtgtcattgatagt 9574146  T
Q  101 gtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatga 200  Q
    |||||||||  ||||||||||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  9574147 gtgaagaaggtgaagatagtcaagatcgagcatgtttggtatcattttacttgagcaatgaggaattcttcataacacccataccctcatacttagatga 9574246  T
Q  201 ttgtttcaatgttcaagcattgtgggtaaa 230  Q
    | ||||| ||||||||||||||||| ||||    
T  9574247 tagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 26 - 279
Target Start/End: Complemental strand, 9602907 - 9602660
Alignment:
Q  26 tttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtgaagaagaagaagatagtcagga 125  Q
    ||||||||||||||||||| ||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||    
T  9602907 tttttgacatgccttattccttggcacttattgacggcagtcaagtctacatggatggtgtgtgtcattggttgtgggaagaagatgaagatagtcaaga 9602808  T
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgg 225  Q
    ||||  | | |||||||||||||||||||||||||||  |||||||||||||||| ||||||| ||||| |||||||||||||      |||||||||||    
T  9602807 tggaagatggttggtatcattttacttgagcaatgaggtattcttcataacacccataccctcgtacttagatgattgtttca------aagcattgtgg 9602714  T
Q  226 gtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
     ||||||||||||||||||| ||| || || ||||||||||||||||| |||||    
T  9602713 ataaacttggtggtgttaaatgggtccgtttcattgatctcatatcataaagag 9602660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 54295437 - 54295156
Alignment:
Q  1 actaactcgtggaggatacttgatgtttttgacatgccttattctttggca------tgtattgacggcactcaagtctacatgaatggtgtgtgtcatt 94  Q
    |||||||| ||||||||||||||||||   |||||||||||||||||| ||      | || ||| ||| |  ||||||||||| |||||||||||||||    
T  54295437 actaactcatggaggatacttgatgtt---gacatgccttattctttgtcaatcccatatagtgagggctccaaagtctacatggatggtgtgtgtcatt 54295341  T
Q  95 ggttgtgtgaagaagaagaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatactt 194  Q
    ||||||||||||   | ||||||| || | |||||||| ||||||||||||||||||||||||||||||  || |||||||||||| || ||||| ||||    
T  54295340 ggttgtgtgaagtgcatgaagataatctgcatggaccatgtttggtatcattttacttgagcaatgagatgtttttcataacacccatatcctcaaactt 54295241  T
Q  195 ggatgattgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
     |||||||||||  ||||||||||||||||| ||| ||||| |||  |||| |||  ||||||||||||||||||||||||||||    
T  54295240 agatgattgttttgatgttcaagcattgtggataaccttggcggtactaaatgggtgcattgcattgatctcatatcatgaagag 54295156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 37895696 - 37895793
Alignment:
Q  7 tcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtgaag 106  Q
    |||||||||| ||||||||||   ||||||||||||||||||| |||||  || ||||| |||||||| ||| |||  ||||||||||||||||||||||    
T  37895696 tcgtggaggaaacttgatgtt---gacatgccttattctttggaatgtaaggagggcacccaagtctatatggatgaagtgtgtcattggttgtgtgaag 37895792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 37897850 - 37897947
Alignment:
Q  182 taccctcatacttggatgattgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    |||||||| ||||||| ||||||||  ||||| |||| |||||| ||||||||| ||||||| | | | ||||||||||| |||||||||||||||||    
T  37897850 taccctcagacttggacgattgttttgatgttaaagctttgtggataaacttggcggtgttatatgagtccattgcattgttctcatatcatgaagag 37897947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 37897699 - 37897796
Alignment:
Q  67 caagtctacatgaatggtgtgtgtcattggttgtgtgaagaaga---agaagatagtcaggatggaccacgtttggtatcattttacttgagcaatga 161  Q
    ||||||||| || |||| |||||||||||||||||| |||||||   ||||||||| |  ||||||||| || |||| ||||||||||||||||||||    
T  37897699 caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatga 37897796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 37895830 - 37895910
Alignment:
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgttt 206  Q
    ||||||| ||||||||||||||||| |||||||||||   |||||| |||||||| |||||||| |||| ||||| |||||    
T  37895830 tggaccatgtttggtatcattttacctgagcaatgaggtgttcttcgtaacacccataccctcagacttagatgactgttt 37895910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 29012590 - 29012834
Alignment:
Q  29 ttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtgaagaagaagaagatagtcaggatgg 128  Q
    |||||||||| ||||||||||  |||||||||||||| |||||||||||| |||| |||||||||||||||| |      |||||||||||  | || |     
T  29012590 ttgacatgccgtattctttggactgtattgacggcacccaagtctacatggatggagtgtgtcattggttgtct------gaagaagatagcaatgagga 29012683  T
Q  129 accacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggta 228  Q
    | || ||||||||||||||||||| |||||||||   ||||||| ||||||| |||| ||| |  | || ||||| |   ||| |  |||||||||| ||    
T  29012684 atcatgtttggtatcattttactttagcaatgaggggttcttcacaacacccttaccgtcagaagtagaggattggtctgatgatttagcattgtggtta 29012783  T
Q  229 aacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    ||||||| ||| ||||| ||| ||||||||||| ||||||||||| |||||    
T  29012784 aacttggcggtattaaatgggtccattgcattggtctcatatcataaagag 29012834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 34281670 - 34281912
Alignment:
Q  29 ttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtgaagaagaagaagatagtcaggatgg 128  Q
    |||||||||| | |||| |||  |||| ||| ||||| ||| |||||||| | |||||||||||||||||||||||| || |  |||||| ||    |||    
T  34281670 ttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatggacggtgtgtgtcattggttgtgtgaaaaacataaagataatcccattgg 34281769  T
Q  129 accacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggta 228  Q
    |||| ||||||||||||||||||||||||||||    | ||||| |||| || ||||| || || | |||||||||||  ||||| |||||  ||||  |    
T  34281770 accatgtttggtatcattttacttgagcaatgaagtgtccttcacaacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtggaaa 34281869  T
Q  229 aacttggtggtgttaaacggggccattgcattgatctcatatc 271  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||    
T  34281870 aacttggtggtgttaaatgggtacatagcattgatctcatatc 34281912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 29131060 - 29131308
Alignment:
Q  29 ttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtgaagaagaagaagatagtcaggatgg 128  Q
    |||||||||||||||| || |  |||| ||  || || |||||||| ||| |||||||||||||||||||||||||| || | ||||| | ||    |||    
T  29131060 ttgacatgccttattcgttagactgtaatgcaggaacccaagtctatatggatggtgtgtgtcattggttgtgtgaaaaacatgaagaaaatcccattgg 29131159  T
Q  129 accacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggta 228  Q
    |||| ||||||||||||||||||||||||||||    ||| ||| ||||||| |||||||| || | |||||||||||  ||||| ||| |   ||| ||    
T  29131160 accatgtttggtatcattttacttgagcaatgaagtgttcgtcacaacacccataccctcagacgtagatgattgttttgatgttaaagaaaattggata 29131259  T
Q  229 aacttggtggtgttaaacggggccattgcattgatctcatatcatgaag 277  Q
    |||||||  ||||| || | | ||||||||||||| |||||||||||||    
T  29131260 aacttggcagtgttgaatgtgtccattgcattgatgtcatatcatgaag 29131308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 29145101 - 29145295
Alignment:
Q  85 gtgtgtcattggttgtgtgaagaaga---agaagatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccg 181  Q
    |||||||||||||||| |||| ||||   |||||| | ||  ||||||||| ||||||| |||||||||||||| | ||||   |||||  ||||||||     
T  29145101 gtgtgtcattggttgtctgaaaaagatgaagaagaaaatcctgatggaccatgtttggtgtcattttacttgagtagtgaggtgttcttagtaacaccca 29145200  T
Q  182 taccctcatacttggatgattgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    |||||||| |||| |||||||||||| ||||| ||||||||||| ||||| |||  ||| |||| |    |||||||||||||||||||||||||    
T  29145201 taccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggcagtgataaatgatttcattgcattgatctcatatcatgaa 29145295  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 29152358 - 29152205
Alignment:
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgg 225  Q
    ||||||| ||||||||||||||||||||||||||||    | | ||| ||||||| ||| | || || | ||||| |||||  ||||| |||||  ||||    
T  29152358 tggaccatgtttggtatcattttacttgagcaatgaagtgtccctcacaacacccatactcccagacgtagatgactgttttgatgttaaagcaaagtgg 29152259  T
Q  226 gtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
     |||||||||  |||||||| ||| |||| ||||||||||||||| ||||||||    
T  29152258 ataaacttgggtgtgttaaatgggtccatagcattgatctcatataatgaagag 29152205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 29299827 - 29300069
Alignment:
Q  29 ttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgtg---aagaagaagaagatagtcagga 125  Q
    ||||||||||||||||||  |   ||| ||| ||||| |||||||||||| |||| ||||| |||||||||||||   |||| ||| || |||| |  |     
T  29299827 ttgacatgccttattcttctgatcgtactgagggcacccaagtctacatggatggagtgtgccattggttgtgtgaaaaagatgaaaaacatagccccgc 29299926  T
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgg 225  Q
    ||||||| ||||||| |||||||||||||||||||||   ||| | ||||||||  |  ||||  ||   |||||||||||  |||||  ||||  ||||    
T  29299927 tggaccatgtttggtgtcattttacttgagcaatgaggtgttccttataacacctatttcctcggacgaagatgattgttttgatgttggagcaaagtgg 29300026  T
Q  226 gtaaacttggtggtgttaaacggggccattgcattgatctcat 268  Q
     |||||||||  |||||||| ||| ||||||| ||||||||||    
T  29300027 ataaacttggctgtgttaaatgggtccattgccttgatctcat 29300069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 276
Target Start/End: Complemental strand, 34258480 - 34258333
Alignment:
Q  129 accacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggta 228  Q
    |||| |||||||||||||| |||| ||||||||    ||||||| ||||||  ||||||||||| | |||||||||||  ||||| |||||  |||| ||    
T  34258480 accatgtttggtatcatttgacttaagcaatgatgtgttcttcaaaacaccaataccctcatacgttgatgattgttttgatgttaaagcaaagtggata 34258381  T
Q  229 aacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    ||||||| ||||||||| |||  |||||| ||  |||||||| |||||    
T  34258380 aacttggcggtgttaaatgggttcattgccttactctcatataatgaa 34258333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 32745081 - 32744939
Alignment:
Q  134 gtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggtaaactt 233  Q
    |||||||||| |||||||||||||| ||    |||||||||||||||||||||||| |  | ||||||| |||  ||||| || |    |||  ||||||    
T  32745081 gtttggtatcgttttacttgagcaaagaagggttcttcataacacccgtaccctcagatgtagatgattcttttgatgttgaaaccaattggagaaactt 32744982  T
Q  234 ggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    || ||||||||| ||| |||||||||||||||||||| |||||    
T  32744981 ggcggtgttaaatgggtccattgcattgatctcatattatgaa 32744939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 23218824 - 23218715
Alignment:
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgg 225  Q
    ||||||| ||||||| |||||||||||||||||||||   |||||  |||||||| |||  ||| |||| ||||||| |||  ||||  |||||| ||||    
T  23218824 tggaccatgtttggtgtcattttacttgagcaatgaggtgttcttagtaacacccatactttcaaacttagatgattcttttgatgtggaagcatcgtgg 23218725  T
Q  226 gtaaacttgg 235  Q
     |||||||||    
T  23218724 ataaacttgg 23218715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 34278580 - 34278523
Alignment:
Q  222 gtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaagag 279  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||| |||||||| |||||    
T  34278580 gtggataaacttggtggtgttaaatgggtccatagcattgatcacatatcataaagag 34278523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 25529047 - 25529001
Alignment:
Q  116 atagtcaggatggaccacgtttggtatcattttacttgagcaatgag 162  Q
    ||||||| | ||||||| |||||||||||||| ||||||||||||||    
T  25529047 atagtcatggtggaccatgtttggtatcatttaacttgagcaatgag 25529001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 29137227 - 29137281
Alignment:
Q  222 gtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    |||| |||||||||||||||||||   | ||||||||||||| ||||||||||||    
T  29137227 gtggataaacttggtggtgttaaatttgtccattgcattgatatcatatcatgaa 29137281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 29124099 - 29124147
Alignment:
Q  228 aaacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    ||||||||  |||||||| ||| ||||||||||| ||||||||||||||    
T  29124099 aaacttggcagtgttaaatgggaccattgcattgttctcatatcatgaa 29124147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 42446049 - 42446150
Alignment:
Q  3 taactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgt 102  Q
    |||| ||||||||| ||||||||||   ||||||||||||||||||| ||||||||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  42446049 taacccgtggaggaaacttgatgtt---gacatgccttattctttggaatgtattgagggcacccaagtctacatggatggagtgtgtcattggttgtgt 42446145  T
Q  103 gaaga 107  Q
    |||||    
T  42446146 gaaga 42446150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 42446187 - 42446337
Alignment:
Q  126 tggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgg 225  Q
    ||||||| |||||||||||||| |||||||||||||   ||||||||  |||||  |||||||| |||| |||| ||||||| |||||  || || ||||    
T  42446187 tggaccatgtttggtatcatttgacttgagcaatgatgtattcttcaccacacctataccctcagacttagatggttgtttctatgttggagaatcgtgg 42446286  T
Q  226 gtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
     |||||||||| |||||||||| | ||||||| |||||||||| |||||||    
T  42446287 ataaacttggttgtgttaaacgagtccattgccttgatctcatttcatgaa 42446337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 16577 - 16304
Alignment:
Q  3 taactcgtggaggatacttgatgtttttgacatgccttattctttggcatgtattgacggcactcaagtctacatgaatggtgtgtgtcattggttgtgt 102  Q
    |||||||||||||| |||||| |||   |||||||| | |||||    ||||| ||| ||||| |||||||||||  |||   | |||||||||||||||    
T  16577 taactcgtggaggaaacttgacgtt---gacatgccattttcttcaaaatgtaatgagggcacccaagtctacatagatgaaatctgtcattggttgtgt 16481  T
Q  103 gaagaagaaga---agatagtcaggatggaccacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatg 199  Q
    ||| |||| ||   |||||  |  | |||| || ||||||| |||||||||||||||||||||   ||||| ||||||||| |||||||| |||| ||||    
T  16480 gaaaaagacgaggaagataaccccgctggagcatgtttggtgtcattttacttgagcaatgaggtgttcttaataacacccataccctcaaacttagatg 16381  T
Q  200 attgtttcaatgttcaagcattgtgggtaaacttggtggtgttaaacggggccattgcattgatctcatatcatgaa 276  Q
    |||||||  ||||| ||||||  ||| |||||||||    |||||| | |  ||||||||||||||| |||||||||    
T  16380 attgttttgatgttgaagcatcatggataaacttggcacggttaaatgagtgcattgcattgatctcttatcatgaa 16304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 274
Target Start/End: Original strand, 49 - 194
Alignment:
Q  129 accacgtttggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatacttggatgattgtttcaatgttcaagcattgtgggta 228  Q
    |||| ||||||| |||||||||||||||||||||   ||||| ||||||||| |||||||| |||| |||||||||||  ||||| ||||||  ||| ||    
T  49 accatgtttggtgtcattttacttgagcaatgaggtgttcttaataacacccataccctcaaacttagatgattgttttgatgttgaagcatcctggata 148  T
Q  229 aacttggtggtgttaaacggggccattgcattgatctcatatcatg 274  Q
    |||||||    |||||| | |  ||||||||||||||| |||||||    
T  149 aacttggcatggttaaatgagtgcattgcattgatctcttatcatg 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 33749 - 33709
Alignment:
Q  67 caagtctacatgaatggtgtgtgtcattggttgtgtgaaga 107  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  33749 caagtctacatggatggagtgtgtcattggttgtgtgaaga 33709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 40100 - 40060
Alignment:
Q  67 caagtctacatgaatggtgtgtgtcattggttgtgtgaaga 107  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  40100 caagtctacatggatggagtgtgtcattggttgtgtgaaga 40060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 40544987 - 40545042
Alignment:
Q  137 tggtatcattttacttgagcaatgagaaattcttcataacacccgtaccctcatac 192  Q
    ||||||||||| |||||| |||||||| ||||||  | ||||||||||||||||||    
T  40544987 tggtatcatttgacttgaacaatgagacattcttagtcacacccgtaccctcatac 40545042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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