View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3531_low_4 (Length: 214)

Name: NF3531_low_4
Description: NF3531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3531_low_4
NF3531_low_4
[»] chr7 (30 HSPs)
chr7 (43-189)||(12256852-12256992)
chr7 (43-186)||(21672033-21672175)
chr7 (43-189)||(10392215-10392356)
chr7 (55-176)||(27238998-27239114)
chr7 (43-189)||(3046404-3046544)
chr7 (43-189)||(12181878-12182026)
chr7 (43-176)||(3880811-3880938)
chr7 (43-136)||(8269178-8269270)
chr7 (43-136)||(42625709-42625801)
chr7 (74-189)||(10387507-10387617)
chr7 (55-133)||(23247877-23247955)
chr7 (43-133)||(26342089-26342177)
chr7 (55-133)||(9815013-9815091)
chr7 (55-133)||(10716938-10717016)
chr7 (64-181)||(2595664-2595776)
chr7 (43-136)||(12800268-12800360)
chr7 (54-133)||(6590149-6590228)
chr7 (54-133)||(44509586-44509664)
chr7 (67-136)||(27246695-27246764)
chr7 (54-114)||(16373248-16373308)
chr7 (54-133)||(4931105-4931183)
chr7 (64-135)||(23319797-23319868)
chr7 (43-136)||(23152194-23152286)
chr7 (2-45)||(4931281-4931325)
chr7 (55-129)||(30258965-30259040)
chr7 (5-45)||(23151683-23151724)
chr7 (2-45)||(10392081-10392125)
chr7 (2-45)||(12802340-12802384)
chr7 (65-128)||(15643180-15643243)
chr7 (2-45)||(42625572-42625616)
[»] chr6 (31 HSPs)
chr6 (43-189)||(12405486-12405626)
chr6 (54-189)||(19994520-19994656)
chr6 (54-188)||(17914423-17914552)
chr6 (43-136)||(11533827-11533919)
chr6 (43-136)||(11559337-11559429)
chr6 (73-189)||(22694518-22694635)
chr6 (43-136)||(25313599-25313693)
chr6 (43-136)||(26201093-26201187)
chr6 (47-175)||(11428810-11428933)
chr6 (43-189)||(11613029-11613169)
chr6 (43-136)||(5856863-5856955)
chr6 (54-136)||(2699251-2699333)
chr6 (43-136)||(11569817-11569909)
chr6 (43-133)||(16835288-16835377)
chr6 (54-176)||(20747433-20747550)
chr6 (64-136)||(4156481-4156553)
chr6 (54-181)||(33686779-33686901)
chr6 (43-133)||(6406986-6407074)
chr6 (54-132)||(14509859-14509937)
chr6 (43-133)||(17963684-17963772)
chr6 (2-45)||(20747291-20747335)
chr6 (66-133)||(8748642-8748708)
chr6 (84-122)||(17600270-17600308)
chr6 (2-45)||(11569686-11569730)
chr6 (2-45)||(22694379-22694423)
chr6 (2-45)||(2699108-2699152)
chr6 (2-45)||(6406854-6406898)
chr6 (2-45)||(11533696-11533740)
chr6 (2-45)||(11559206-11559250)
chr6 (2-45)||(16835155-16835199)
chr6 (2-45)||(17600435-17600479)
[»] scaffold0690 (1 HSPs)
scaffold0690 (43-189)||(6062-6202)
[»] chr3 (32 HSPs)
chr3 (44-136)||(12970936-12971028)
chr3 (43-136)||(20520839-20520931)
chr3 (54-136)||(3419871-3419953)
chr3 (43-177)||(14437816-14437949)
chr3 (43-177)||(46964855-46964983)
chr3 (43-133)||(7570341-7570429)
chr3 (43-133)||(18468094-18468182)
chr3 (43-133)||(18472888-18472976)
chr3 (43-133)||(39774951-39775039)
chr3 (43-132)||(12111711-12111803)
chr3 (43-131)||(55432110-55432197)
chr3 (54-133)||(23660625-23660703)
chr3 (54-133)||(23665257-23665335)
chr3 (43-133)||(27709813-27709901)
chr3 (43-133)||(55326659-55326747)
chr3 (43-136)||(12965010-12965101)
chr3 (43-133)||(757489-757576)
chr3 (79-133)||(32473183-32473237)
chr3 (2-45)||(757358-757402)
chr3 (2-45)||(7570209-7570253)
chr3 (2-45)||(12970802-12970846)
chr3 (2-45)||(18473064-18473108)
chr3 (2-45)||(20521019-20521063)
chr3 (2-45)||(23660483-23660527)
chr3 (2-45)||(23665115-23665159)
chr3 (2-45)||(32473138-32473182)
chr3 (55-129)||(29351111-29351186)
chr3 (2-43)||(20175450-20175492)
chr3 (4-40)||(12964879-12964916)
chr3 (2-45)||(3656251-3656295)
chr3 (2-45)||(18468270-18468314)
chr3 (2-45)||(46965070-46965114)
[»] chr1 (23 HSPs)
chr1 (43-189)||(11807044-11807189)
chr1 (53-142)||(8138505-8138594)
chr1 (43-181)||(19798121-19798253)
chr1 (43-133)||(10140975-10141063)
chr1 (43-136)||(33300387-33300479)
chr1 (65-136)||(38621590-38621661)
chr1 (43-133)||(10136207-10136295)
chr1 (43-133)||(16648756-16648845)
chr1 (43-133)||(51040647-51040735)
chr1 (54-133)||(25844638-25844716)
chr1 (43-133)||(26926846-26926934)
chr1 (43-129)||(12260860-12260946)
chr1 (79-136)||(39199918-39199975)
chr1 (43-129)||(39586204-39586290)
chr1 (2-45)||(10136383-10136427)
chr1 (2-45)||(25844814-25844858)
chr1 (2-45)||(26926723-26926767)
chr1 (54-129)||(46697220-46697295)
chr1 (2-45)||(5100169-5100212)
chr1 (67-129)||(16036490-16036553)
chr1 (43-100)||(47450319-47450375)
chr1 (13-45)||(38622247-38622279)
chr1 (13-45)||(51040527-51040559)
[»] chr2 (31 HSPs)
chr2 (54-189)||(40846718-40846848)
chr2 (43-175)||(24537149-24537281)
chr2 (43-133)||(17974477-17974565)
chr2 (43-136)||(12797807-12797899)
chr2 (43-136)||(29678556-29678648)
chr2 (43-136)||(12002031-12002123)
chr2 (43-136)||(25477415-25477507)
chr2 (43-136)||(25496510-25496602)
chr2 (54-133)||(30651796-30651874)
chr2 (43-133)||(9179853-9179941)
chr2 (43-133)||(19891631-19891719)
chr2 (53-133)||(18345289-18345368)
chr2 (54-133)||(1934127-1934205)
chr2 (43-136)||(12361130-12361219)
chr2 (43-133)||(9184544-9184632)
chr2 (68-136)||(20103259-20103328)
chr2 (43-133)||(17968090-17968176)
chr2 (43-133)||(25637890-25637979)
chr2 (144-189)||(19896852-19896897)
chr2 (2-45)||(1934003-1934047)
chr2 (2-45)||(9179720-9179764)
chr2 (2-45)||(17967958-17968002)
chr2 (2-45)||(18345474-18345518)
chr2 (2-45)||(20101644-20101688)
chr2 (2-45)||(30651972-30652016)
chr2 (43-129)||(32080261-32080346)
chr2 (2-42)||(25477283-25477324)
chr2 (2-45)||(12361303-12361347)
chr2 (2-45)||(12797988-12798032)
chr2 (2-45)||(17974345-17974389)
chr2 (55-114)||(42925811-42925871)
[»] chr4 (38 HSPs)
chr4 (54-136)||(32081301-32081383)
chr4 (43-136)||(13064936-13065027)
chr4 (43-136)||(16421924-16422016)
chr4 (64-186)||(40408769-40408892)
chr4 (54-136)||(19907126-19907208)
chr4 (44-133)||(29349332-29349422)
chr4 (43-136)||(2820671-2820762)
chr4 (43-136)||(51698804-51698899)
chr4 (43-177)||(13060308-13060436)
chr4 (54-136)||(39216234-39216316)
chr4 (43-136)||(55252522-55252614)
chr4 (43-182)||(32220690-32220821)
chr4 (54-133)||(31274396-31274474)
chr4 (54-133)||(37263699-37263777)
chr4 (43-133)||(8694595-8694683)
chr4 (43-136)||(33468128-33468215)
chr4 (45-133)||(31728493-31728579)
chr4 (54-133)||(37258999-37259077)
chr4 (43-133)||(33462480-33462564)
chr4 (43-130)||(5270549-5270634)
chr4 (43-133)||(31766754-31766842)
chr4 (63-133)||(5927362-5927431)
chr4 (43-136)||(23093987-23094079)
chr4 (45-105)||(12823038-12823097)
chr4 (43-129)||(16948885-16948971)
chr4 (43-127)||(12875290-12875374)
chr4 (64-104)||(6943684-6943724)
chr4 (2-45)||(5270417-5270461)
chr4 (2-45)||(6943820-6943864)
chr4 (2-45)||(8694771-8694815)
chr4 (2-45)||(16422104-16422148)
chr4 (2-45)||(31274572-31274616)
chr4 (2-45)||(37263557-37263601)
chr4 (13-45)||(55252703-55252735)
chr4 (2-43)||(33467997-33468039)
chr4 (13-45)||(5925810-5925842)
chr4 (13-45)||(27183283-27183315)
chr4 (2-45)||(31728360-31728404)
[»] scaffold0054 (2 HSPs)
scaffold0054 (43-136)||(30055-30147)
scaffold0054 (2-45)||(30235-30279)
[»] chr5 (34 HSPs)
chr5 (43-136)||(20180276-20180368)
chr5 (43-133)||(6154558-6154647)
chr5 (54-133)||(39519277-39519355)
chr5 (54-133)||(39523916-39523994)
chr5 (43-133)||(26668160-26668248)
chr5 (43-133)||(26939757-26939845)
chr5 (43-133)||(37247925-37248014)
chr5 (43-133)||(37537064-37537152)
chr5 (43-133)||(37646183-37646271)
chr5 (43-136)||(12103932-12104024)
chr5 (43-136)||(6511755-6511850)
chr5 (43-133)||(7452636-7452725)
chr5 (43-133)||(29167099-29167187)
chr5 (54-133)||(36424520-36424598)
chr5 (2-45)||(10759356-10759399)
chr5 (54-133)||(36430400-36430478)
chr5 (71-136)||(16115381-16115446)
chr5 (2-45)||(29166967-29167011)
chr5 (87-136)||(15413861-15413910)
chr5 (2-45)||(23757158-23757202)
chr5 (2-45)||(23822614-23822658)
chr5 (2-45)||(37247793-37247837)
chr5 (2-45)||(37536931-37536975)
chr5 (2-45)||(37646049-37646093)
chr5 (2-45)||(40150253-40150297)
chr5 (55-129)||(4872771-4872846)
chr5 (74-136)||(35679055-35679117)
chr5 (43-88)||(10759487-10759531)
chr5 (2-45)||(7452813-7452857)
chr5 (2-45)||(20180149-20180193)
chr5 (2-45)||(26668336-26668380)
chr5 (2-45)||(26939933-26939977)
chr5 (2-45)||(36424696-36424740)
chr5 (2-45)||(39519443-39519487)
[»] chr8 (25 HSPs)
chr8 (54-136)||(15950711-15950793)
chr8 (43-175)||(23547730-23547861)
chr8 (43-177)||(1910073-1910202)
chr8 (43-136)||(38181408-38181500)
chr8 (43-136)||(44925047-44925139)
chr8 (43-136)||(26779982-26780074)
chr8 (54-136)||(17027019-17027101)
chr8 (54-136)||(17557511-17557593)
chr8 (43-136)||(1808329-1808421)
chr8 (59-136)||(22714139-22714216)
chr8 (54-133)||(40125030-40125108)
chr8 (43-133)||(33417412-33417500)
chr8 (67-181)||(19168601-19168712)
chr8 (45-136)||(2966463-2966553)
chr8 (43-136)||(18875511-18875603)
chr8 (70-136)||(24672471-24672537)
chr8 (2-45)||(1808508-1808552)
chr8 (2-45)||(1909941-1909985)
chr8 (99-136)||(17026796-17026833)
chr8 (99-136)||(17557288-17557325)
chr8 (5-45)||(38181279-38181320)
chr8 (13-45)||(17021313-17021345)
chr8 (13-45)||(17551750-17551782)
chr8 (2-45)||(26780161-26780205)
chr8 (2-45)||(40124888-40124932)
[»] scaffold0057 (1 HSPs)
scaffold0057 (43-136)||(36001-36092)
[»] scaffold0240 (2 HSPs)
scaffold0240 (43-113)||(4872-4942)
scaffold0240 (2-45)||(5027-5071)
[»] scaffold0352 (2 HSPs)
scaffold0352 (43-133)||(7990-8079)
scaffold0352 (2-45)||(8167-8211)
[»] scaffold0002 (2 HSPs)
scaffold0002 (54-133)||(4946-5024)
scaffold0002 (43-133)||(443065-443154)
[»] scaffold0011 (1 HSPs)
scaffold0011 (2-45)||(64889-64932)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 12256992 - 12256852
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||     |     
T  12256992 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtggttgtgataagaatagga-----at 12256899  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
     |||||||||||||||| |||| |||||||||||| |||||||||||    
T  12256898 tcaattgaatttcttatttttccttcattcaaatccaatgagtttgt 12256852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 21672175 - 21672033
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  21672175 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccat-aatttaccttatggtggttgtgataagaataagaataagaa 21672078  T
Q  143 -acaattgaatttcttatctttcattcattcaaatctaatgagtt 186  Q
       ||||||||||||||| |||||||| |||||||| ||||||||    
T  21672077 tttaattgaatttcttatatttcattccttcaaatccaatgagtt 21672033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 10392215 - 10392356
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||||||||     |     
T  10392215 tgataataataaaaaaaaaatgtaattattatttttattcatgaatatcacttcccataaatttaggttatggtgattgtgataagaataaga-----at 10392309  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
     ||||||||||||||||||||| |||||||||||| |||||||||||    
T  10392310 tcaattgaatttcttatctttccttcattcaaatccaatgagtttgt 10392356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 27239114 - 27238998
Alignment:
Q  55 aaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaattt 154  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||     |   ||||||||||    
T  27239114 aaaataatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatggttgttgtgataacaataaga-----atttaattgaattt 27239020  T
Q  155 cttatctttcattcattcaaat 176  Q
    ||||| ||||||||||||||||    
T  27239019 cttatatttcattcattcaaat 27238998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 3046544 - 3046404
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| ||||  | | ||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||     |     
T  3046544 tgataatgataaaaa-taataattactataatttttattcgtgaatatcacttcctataaatttaacttatggtggttgtgataagaataaga-----at 3046451  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
     ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3046450 tcaattgaatgtcttatctttccttcattcaaatctaatgagtttgt 3046404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 12181878 - 12182026
Alignment:
Q  43 tgataatgataaaaa--ataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaag 140  Q
    |||||||||||||||  ||| |  |||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  12181878 tgataatgataaaaataatagtaataatcattttttttattcgtgaatatcacttccaataaatttagcttatggtggttgtgataagaataagaataag 12181977  T
Q  141 aa-acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
    ||  |||||||| ||||||| |||| ||| |||||||| |||||||||||    
T  12181978 aattcaattgaa-ttcttatatttccttcgttcaaatccaatgagtttgt 12182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 3880938 - 3880811
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |     |     
T  3880938 tgataatgataaaaa-taatagtaattattatttttatttgtgaatatcacttcccataaatttagcttatgattgttgtgataagaataata-----at 3880845  T
Q  143 acaattgaatttcttatctttcattcattcaaat 176  Q
      ||||||||||||||| ||||||||||||||||    
T  3880844 ttaattgaatttcttatatttcattcattcaaat 3880811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 8269270 - 8269178
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  8269270 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcactttccataaatttaacttatggtggttgtgataaggataagaa 8269178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 42625709 - 42625801
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  42625709 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactttccataaatttaacttatggtggttgtgataagaataagaa 42625801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 10387507 - 10387617
Alignment:
Q  74 tttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatttcttatctttcattcattca 173  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     |  ||||||||||||||||||||  ||||||||    
T  10387507 ttttttttcgtgaatatcacttcccataaatttagcttatggttgttgtgataagaataaga-----attcaattgaatttcttatcttttcttcattca 10387601  T
Q  174 aatctaatgagtttgt 189  Q
    |||| || ||||||||    
T  10387602 aatccaacgagtttgt 10387617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 23247877 - 23247955
Alignment:
Q  55 aaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||    
T  23247877 aaaataatagtaattattatttttattcgtaaatatcacttcccataaattgagcttatggtgattgtgataagaataa 23247955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 26342177 - 26342089
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  26342177 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 26342089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 9815013 - 9815091
Alignment:
Q  55 aaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  9815013 aaaataatagtaattattatttttattcatcaatatcacttctcataaatttagcttacgttggttgtgataagaataa 9815091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 10716938 - 10717016
Alignment:
Q  55 aaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  10716938 aaaataatagtaattattatttttattcatcaatatcacttctcataaatttagcttacgttggttgtgataagaataa 10717016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 2595776 - 2595664
Alignment:
Q  64 gtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatttcttatcttt 163  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||| ||||     |   ||||||||||||||| |||    
T  2595776 gtaattattctttttattcgagaatatcacttcccataaacttagcttatggtggctgtgataagaaaaaga-----atttaattgaatttcttatattt 2595682  T
Q  164 cattcattcaaatctaat 181  Q
      ||||||||||||||||    
T  2595681 tcttcattcaaatctaat 2595664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 12800360 - 12800268
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||||| |||| |||||||||||| |||| || ||||| |||||||||||||    
T  12800360 tgataatgataaaaa-taatagtaattattatttttattcgaaaatataactttccataaatttaggttatagtggttgtaataagaataagaa 12800268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 6590149 - 6590228
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| ||||  | ||||||||||||||||    
T  6590149 aaaaataatagtcattattatttttattcgtggatatcatttcccataaatttagtttatatttgttgtgataagaataa 6590228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 44509586 - 44509664
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  44509586 aaaaataatagtaattattatttt-atttgagaatatcactttccataaatttagcttacggtggttgtgataagaataa 44509664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 27246695 - 27246764
Alignment:
Q  67 attattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| | |||| ||||| ||||||||    
T  27246695 attattatttttattcgtggatatcacttctcataaatttagcttatgttggttgcgataaaaataagaa 27246764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 16373308 - 16373248
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatg 114  Q
    ||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  16373308 aaaaataatagtcattattatttttattcgtgtatatcactttccataaatttagcttatg 16373248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 4931183 - 4931105
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||  | ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  4931183 aaaaataatagtaattattatttt-atctgagaatatcactttccataaatttagtttatggtggttgtgataagaataa 4931105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 23319868 - 23319797
Alignment:
Q  64 gtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataaga 135  Q
    |||||||||| ||||||||||| ||||||||| |||||||||| | ||||| | ||||||| ||||||||||    
T  23319868 gtaattattacttttattcgtggatatcacttgccataaatttggtttatgttggttgtgacaagaataaga 23319797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 23152194 - 23152286
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| ||||  | |||||||||||||| | ||||||||| || |||||||||||| ||||| |  || |||||||||||||||    
T  23152194 tgataatgataaaaa-taataattattattatttttatccatgaatatcattttccataaatttagtttatgatgattatgataagaataagaa 23152286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 4931325 - 4931281
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  4931325 aagattaaacaccaagtaattatactttgatataatgttgtgtga 4931281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 30259040 - 30258965
Alignment:
Q  55 aaaataattgtaattattatt-tttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||  |||| |||||| ||||||| || |||||||||||||||| ||||| ||||| | ||||||||||||    
T  30259040 aaaataataataataattattgtttattcatggatatcacttcccataattttagattatgtttgttgtgataaga 30258965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23151683 - 23151724
Alignment:
Q  5 attaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  23151683 attaaacatcaagtaattatactttgatctaatgttgtgtga 23151724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 10392081 - 10392125
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  10392081 aagattaaacaccaagtaattatactttgatctagtgttgtgtga 10392125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 12802384 - 12802340
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||||| || |||||||||||||    
T  12802384 aagattaaacaccaagtaattatactttaatctaatgttgtgtga 12802340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 15643243 - 15643180
Alignment:
Q  65 taattattattttt-attcgtgaatatcacttcccataaatttagcttatggtagttgtgataag 128  Q
    |||||||||||||| |||| ||| |||||| |||||||| |||| |||||| |||||||||||||    
T  15643243 taattattattttttattcatga-tatcacatcccataattttaacttatgctagttgtgataag 15643180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 42625572 - 42625616
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||    
T  42625572 aagattaaacaccaagtaattatactttgatctaatgttatgtga 42625616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 12405486 - 12405626
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||     |     
T  12405486 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtgattgtgataagaataaga-----at 12405579  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
     |||||||||||||||||||||  ||||||||||| |||||||||||    
T  12405580 tcaattgaatttcttatctttccatcattcaaatccaatgagtttgt 12405626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 19994520 - 19994656
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa-acaattgaat 152  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||||| |||||  ||||| |||    
T  19994520 aaaaataatagtaattattatttttattcgtgaatatcacttgccaaacatttagcttatagtggttgtgataagaataagaataagaattcaattaaat 19994619  T
Q  153 ttcttatctttcattcattcaaatctaatgagtttgt 189  Q
    ||||||| |||| |||||||||||| |||||||||||    
T  19994620 ttcttatatttccttcattcaaatccaatgagtttgt 19994656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 17914552 - 17914423
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatt 153  Q
    ||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||     |  ||||| ||||    
T  17914552 aaaaataatagcaattattatttttatttgtgaatatcacttcccataaatttaggttatggtggttgtgataagaataaga-----attcaattcaatt 17914458  T
Q  154 tcttatctttcattcattcaaatctaatgagtttg 188  Q
    || |||||||| |||||||||||||||||||||||    
T  17914457 tcatatctttccttcattcaaatctaatgagtttg 17914423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 11533827 - 11533919
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  11533827 tgataatgataaaa-ataattgtaattattatttttattcgagaatatcactttccataaatttagcttatggtggttgtgataagaataagaa 11533919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 11559337 - 11559429
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  11559337 tgataatgataaaa-ataattgtaattattatttttattcgagaatatcactttccataaatttagcttatggtggttgtgataagaataagaa 11559429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 22694518 - 22694635
Alignment:
Q  73 atttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa-acaattgaatttcttatctttcattcatt 171  Q
    ||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||| |||||  |||||||||||||||| |||| ||||||    
T  22694518 atttttattcgtgaatatcacttaccatatatttagcttatgatggttgtgataagaataagaataagaattcaattgaatttcttatttttccttcatt 22694617  T
Q  172 caaatctaatgagtttgt 189  Q
    |||||| |||||||||||    
T  22694618 caaatccaatgagtttgt 22694635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 25313599 - 25313693
Alignment:
Q  43 tgataatgataaaaaa-taattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  25313599 tgataatgataaaaaaataatagtaattattatttttattcgagaatatcacttcctataaatttagcttatgatagttgtgataagaataagaa 25313693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 26201093 - 26201187
Alignment:
Q  43 tgataatgataaaaaa-taattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  26201093 tgataatgataaaaaaataatagtaattattatttttattcgagaatatcacttcctataaatttagcttatgatagttgtgataagaataagaa 26201187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 11428933 - 11428810
Alignment:
Q  47 aatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaa 146  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||     |  |||    
T  11428933 aatgataaaaaataatagaaattattatttttattcgtgaatatcacttcccataaatttagcttatgttggttgtgataaaaatatga-----attcaa 11428839  T
Q  147 ttgaatttcttatctttcattcattcaaa 175  Q
    ||||||||||||| |||| ||||||||||    
T  11428838 ttgaatttcttatatttccttcattcaaa 11428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 11613029 - 11613169
Alignment:
Q  43 tgataatgataaaaaataattgtaatta-ttatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaaga 141  Q
    ||||||||||||||| |||| || |||| ||| |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||     |    
T  11613029 tgataatgataaaaa-taatagtgattaattaattttattcgtgaatatcattttccataaatttagcttatggt-gttgtgataagaataaga-----a 11613121  T
Q  142 aacaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
      |||||||||||||||||||||||||||||||||  |||||||||||    
T  11613122 ttcaattgaatttcttatctttcattcattcaaattcaatgagtttgt 11613169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 5856955 - 5856863
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  5856955 tgataatgataaaaa-taatagtaattgttatttttattcgagaatatcacttcccaaaaatttagcttatggtggttgtgataagaataagaa 5856863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 2699251 - 2699333
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  2699251 aaaaataatagtaattattatttttattcgagaatatcacttcccataaatttagcttataatagttgtaataagaataagaa 2699333  T

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Target: chr6; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 11569817 - 11569909
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||| |||||||||||    
T  11569817 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactgtccataaatttagcttatggtcgttgtgaaaagaataagaa 11569909  T

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Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 16835288 - 16835377
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  16835288 tgataatgataaaaa-taatagtaattattatttttatttgagaatatcactttccataaatttagtttatggtggttgtgataagaataa 16835377  T

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Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 20747433 - 20747550
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatt 153  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||     ||   |||||||||    
T  20747433 aaaaacaatagtaattattatttttattcgtgaatatcacttcccataaatttagcatatggttgttgtggtaagaacaag-----gatttaattgaatt 20747527  T
Q  154 tcttatctttcattcattcaaat 176  Q
    |||||| |||| |||||||||||    
T  20747528 tcttatatttccttcattcaaat 20747550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 4156481 - 4156553
Alignment:
Q  64 gtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  4156481 gtaattattatttttattcgagaatatcacttccgataaatttagcttatggtggttgtaataagaataagaa 4156553  T

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Target: chr6; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 33686779 - 33686901
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatt 153  Q
    ||||||||| |||||||||||||||||||   |||||||||| |||||||||||| ||| |||  ||||||||||||||| ||  |     |||||||||    
T  33686779 aaaaataatagtaattattatttttattcaataatatcactttccataaatttagtttagggtgattgtgataagaataataatta-----aattgaatt 33686873  T
Q  154 tcttatctttcattcattcaaatctaat 181  Q
    |||||| |||||||||||||||||||||    
T  33686874 tcttatatttcattcattcaaatctaat 33686901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 6406986 - 6407074
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||    
T  6406986 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcattttccataaatttagcttatggtggttgtgataagaataa 6407074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 14509937 - 14509859
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaata 132  Q
    ||||||||| ||||||||| |||||||| | |||||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  14509937 aaaaataatagtaattattttttttatttgagaatatcacttctcataaatttagtttatggtggttgcgataagaata 14509859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17963684 - 17963772
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||  ||||||||||||||||||  ||||||||||||||||    
T  17963684 tgataatgataaaaa-taatagtaattgttatttt-attcgagaatatcacttttcataaatttagcttatggcggttgtgataagaataa 17963772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 20747291 - 20747335
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  20747291 aagattaaacatcaagtaattatactttgatttaatgttgtgtga 20747335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 8748708 - 8748642
Alignment:
Q  66 aattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||||| ||| | |||||||| ||  ||||||||||||||||||| ||||||||||||||||    
T  8748708 aattattatttt-atttgagaatatcatttttcataaatttagcttatggtggttgtgataagaataa 8748642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 17600308 - 17600270
Alignment:
Q  84 tgaatatcacttcccataaatttagcttatggtagttgt 122  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  17600308 tgaatatcacttcccataaatttagcttatggtggttgt 17600270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 11569686 - 11569730
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  11569686 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 11569730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 22694379 - 22694423
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  22694379 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 22694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 2699108 - 2699152
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| |||||||||||||||| || |||||||||||||    
T  2699108 aagattaaacatcaagtaattatactttaatctaatgttgtgtga 2699152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6406854 - 6406898
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  6406854 aagattaaacaccaagtaattatactttgatctattgttgtgtga 6406898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 11533696 - 11533740
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  11533696 aagattaaacaccaagtaattatagtttgatctaatgttgtgtga 11533740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 11559206 - 11559250
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  11559206 aagattaaacaccaagtaattatagtttgatctaatgttgtgtga 11559250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16835155 - 16835199
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||    
T  16835155 aagattaaacaccaagtaaatatactttgatctaatgttgtgtga 16835199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 17600479 - 17600435
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||    
T  17600479 aagattaaacaccaagtaatcatactttgatctaatgttgtgtga 17600435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 6202 - 6062
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||     |     
T  6202 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatggaggttgtgataagaataaga-----at 6109  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
     ||  | ||||||||||||||| |||||||||||| |||||||||||    
T  6108 tcacctaaatttcttatctttccttcattcaaatcaaatgagtttgt 6062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 12970936 - 12971028
Alignment:
Q  44 gataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  12970936 gataatgataaaaaataatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatgatggttgtgataataataagaa 12971028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 20520931 - 20520839
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20520931 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcacttcccataaatttagcttatggtggttgtgataagaataagaa 20520839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 3419953 - 3419871
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  3419953 aaaaataatagtaattattatttttattcgagaatatcacttcgcataaatttagcatatggtagttgtgataagaataagaa 3419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 14437816 - 14437949
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| ||||  ||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||    |     
T  14437816 tgataatgataaaaa-taataataattattatttttattcgagaatatcactttccataaatttagcttacggttgttgtgataagaataagaatttaat 14437914  T
Q  143 acaattgaatttcttatctttcattcattcaaatc 177  Q
      ||||||||||||||| |||| ||||||||||||    
T  14437915 ttaattgaatttcttatatttccttcattcaaatc 14437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 46964983 - 46964855
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| ||||  |||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||     |     
T  46964983 tgataatgataaaaa-taataataataattatttttattcgagaatatcacttcacataaatttagcttatggtggttgtgataagaataaga-----at 46964890  T
Q  143 acaattgaatttcttatctttcattcattcaaatc 177  Q
      ||||||||||||||| |||| ||||||||||||    
T  46964889 ttaattgaatttcttatatttccttcattcaaatc 46964855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 7570341 - 7570429
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  7570341 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagtttatggtggttgtgataagaataa 7570429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 18468182 - 18468094
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  18468182 tgataatgataaaaa-taatagtaattattattttaat-cgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 18468094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 18472976 - 18472888
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  18472976 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatgatggttgtgataagaataa 18472888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 39774951 - 39775039
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  39774951 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatgatggttgtgataagaataa 39775039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 12111711 - 12111803
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttccca----taaatttagcttatggtagttgtgataagaata 132  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||  ||||| ||||||||    
T  12111711 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccataattaaatttagcttatggtgattgtgctaagaata 12111803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 55432197 - 55432110
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaat 131  Q
    ||||||||||||||| ||  | ||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  55432197 tgataatgataaaaattatat-taattattatttttattcgagaatatcatttcccataaatttaacttatggtggttgtgataagaat 55432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 23660625 - 23660703
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  23660625 aaaaataatagtaattattatttt-attagagaatatcactttccataaatttagcttatggtggttgtgataagaataa 23660703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 23665257 - 23665335
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  23665257 aaaaataatagtaattattatttt-attagagaatatcactttccataaatttagcttatggtggttgtgataagaataa 23665335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 27709901 - 27709813
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||||||||  ||||||||||| ||||||| ||||||||||||||||    
T  27709901 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcacttttcataaatttagtttatggtggttgtgataagaataa 27709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 55326747 - 55326659
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| ||| |||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  55326747 tgataatgataaaaa-taatagtagttattatttt-attcgagaatatcactttcgataaatttagcttatggtggttgtgataagaataa 55326659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 12965010 - 12965101
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||| || | | ||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  12965010 tgataatgataaaaa-taatagtaattattatttt-atacataaatatcacttcccataaatttagcttatgatggatgtgataagaataagaa 12965101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 757489 - 757576
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| ||||||||||||||   | | ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  757489 tgataatgataaaaa-taatagtaattattatttta--tagagaatatcactttccataaatttagtttatggtggttgtgataagaataa 757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 32473183 - 32473237
Alignment:
Q  79 attcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  32473183 attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 32473237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 757358 - 757402
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  757358 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 757402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 7570209 - 7570253
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  7570209 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 7570253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 12970802 - 12970846
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  12970802 aagattaaacaccaagtaattatacgttgatttaatgttgtgtga 12970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 18473108 - 18473064
Alignment:
Q  2 aagattaaacacaa-gtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||||| |||||||||||||||| |||||||||||||    
T  18473108 aagattaaacacaaagtaattatactttgatctaatgttgtgtga 18473064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 20521063 - 20521019
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  20521063 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 20521019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 23660483 - 23660527
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  23660483 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 23660527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 23665115 - 23665159
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  23665115 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 23665159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 32473138 - 32473182
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  32473138 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 32473182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 29351186 - 29351111
Alignment:
Q  55 aaaataattgtaattattatt-tttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||  ||||||||||| ||||||| || |||||||||| ||||| ||||| ||||| | ||||||||||||    
T  29351186 aaaataataataattattattctttattcatggatatcacttctcataattttagattatgtttgttgtgataaga 29351111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 20175492 - 20175450
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgt 43  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  20175492 aagattaaacaccaagtaattatactttgatctaatgttgtgt 20175450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 12964879 - 12964916
Alignment:
Q  4 gattaaacac-aagtaattatactttgatttaatgttg 40  Q
    |||||||||| |||||||||||||||||||||||||||    
T  12964879 gattaaacaccaagtaattatactttgatttaatgttg 12964916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 3656251 - 3656295
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  3656251 aagattaaacaccaagtaattaaactttgatttagtgttgtgtga 3656295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 18468314 - 18468270
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  18468314 aagattaaacaccaagtaattatagtttgatctaatgttgtgtga 18468270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 46965114 - 46965070
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  46965114 aagattaaacaccaaataattatactttgatctaatgttgtgtga 46965070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 11807189 - 11807044
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    |||||||||||||||  |||  ||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || |||||    
T  11807189 tgataatgataaaaac-aatattaattattatttttattccggaatatcatttcccataaatttagcttatggtggttgtgataagaataaaaataagaa 11807091  T
Q  143 -acaattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
      |||||||| |||||||||||| |||||||||||| |||||||||||    
T  11807090 ttcaattgaa-ttcttatctttctttcattcaaatccaatgagtttgt 11807044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 8138594 - 8138505
Alignment:
Q  53 aaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||    
T  8138594 aaaaaataatagtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtggtcgtaataagaataagaataagaa 8138505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 19798121 - 19798253
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||     |     
T  19798121 tgataatgataaaaa-taatagtaataattatttttatttgagaatatcacttcccataaatttagcttatggtggttgtgataagaataaga-----at 19798214  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaat 181  Q
      |||| |||||||||| |||| ||||||||||||||||    
T  19798215 ttaatttaatttcttatatttccttcattcaaatctaat 19798253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 10141063 - 10140975
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10141063 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcacttcccataaatttagtttatggtagttgtgataagaataa 10140975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 33300387 - 33300479
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||  ||||||||||||||||||    
T  33300387 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcaattctcataaatttagcttatcgtgtttgtgataagaataagaa 33300479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 38621661 - 38621590
Alignment:
Q  65 taattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38621661 taattattatttttatttgagaatatcacttcccataaatttagcttatggtggttgtgataagaataagaa 38621590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 10136295 - 10136207
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10136295 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 10136207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 16648756 - 16648845
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| ||||||||||||||||||||  |||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  16648756 tgataatgataaaaa-taatagtaattattatttttattcgataatatcactttccataaatttaacttacggtggttgtgataagaataa 16648845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 51040647 - 51040735
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||    
T  51040647 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcattttccataaatttagcttatggtggttgtgataagaataa 51040735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 25844716 - 25844638
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  25844716 aaaaataatagtaattattatttt-attagagaatatcactttccataaatttagcttatggtggttgtgataagaataa 25844638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 26926846 - 26926934
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| | |||||||||  ||||||||||||||||||| ||||||||||||||||    
T  26926846 tgataatgataaaaa-taatagtaattattatttt-attcgagcatatcacttttcataaatttagcttatggtggttgtgataagaataa 26926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 12260946 - 12260860
Alignment:
Q  43 tgataatgataaaaaataattgtaattattattttt-attcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||||||||| |||| ||||||||||||||| |||| || |||||||||| ||||| ||||||||||| | ||||||||||||    
T  12260946 tgataatgataaaaa-taatagtaattattattttttattcatggatatcacttctcataattttagcttatgttggttgtgataaga 12260860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 39199918 - 39199975
Alignment:
Q  79 attcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  39199918 attcatgaatatcacttcccataaatttggcttatggtagctgtgattagaataagaa 39199975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 39586204 - 39586290
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatt-tttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||||||||| ||||  ||||||||||| ||||||| |||||||||||||||| || ||||  ||||| | ||||||||||||    
T  39586204 tgataatgataaaaa-taataataattattattctttattcatgaatatcacttcccacaattttaagttatgtttgttgtgataaga 39586290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 10136427 - 10136383
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  10136427 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 10136383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 25844858 - 25844814
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  25844858 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 25844814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 26926723 - 26926767
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  26926723 aagattaaacaccaactaattatactttgatttaatgttgtgtga 26926767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 46697295 - 46697220
Alignment:
Q  54 aaaaataattgtaattattat-ttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||||| | ||||| ||||| | ||||||||||||    
T  46697295 aaaaataatagtaattattattttttactcatgaatatcacttcccattattttag-ttatgtttgttgtgataaga 46697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 5100169 - 5100212
Alignment:
Q  2 aagattaaacacaagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||||||||||| || ||||||| |||||    
T  5100169 aagattaaacacaagtaattatactttaatctaatgttatgtga 5100212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 16036553 - 16036490
Alignment:
Q  67 attattatt-tttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||| ||||| | ||||||||||||    
T  16036553 attattattctttattcatgaatatcactttccataattttaggttatgtttgttgtgataaga 16036490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 47450319 - 47450375
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccat 100  Q
    ||||||||||||||| ||||  | ||||||||||||||||| ||||||||||| ||||    
T  47450319 tgataatgataaaaa-taataattattattatttttattcgagaatatcactttccat 47450375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 38622279 - 38622247
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  38622279 caagtaattatactttgatctaatgttgtgtga 38622247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 51040527 - 51040559
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  51040527 caagtaattatactttgatctaatgttgtgtga 51040559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 40846718 - 40846848
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaaacaattgaatt 153  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||||||||||||||||||     |  ||||||||||    
T  40846718 aaaaataatagtaatttttatttttatttgtgaatatcacttcctataaatttagtttatgatggttgtgataagaataaga-----attcaattgaatt 40846812  T
Q  154 tcttatctttcattcattcaaatctaatgagtttgt 189  Q
    ||||||||||| ||||||||||| ||||||||||||    
T  40846813 tcttatctttccttcattcaaatttaatgagtttgt 40846848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 24537149 - 24537281
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaaga- 141  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| | || ||||||||||||||| ||| ||||     
T  24537149 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcatttcccatacatttaacttctagtggttgtgataagaatatgaataagat 24537247  T
Q  142 aacaattgaatttcttatctttcattcattcaaa 175  Q
      ||||||||||||||||||||| ||||||||||    
T  24537248 ttcaattgaatttcttatctttccttcattcaaa 24537281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17974477 - 17974565
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17974477 tgataatgataaaaa-taattgtaattattatttt-attcgagaatatcactttccataaatttagcttatggtagttgtgataagaataa 17974565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 12797899 - 12797807
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  12797899 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcacttcctataaatttaccttatggtggttgtgataagaataagaa 12797807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 29678648 - 29678556
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  29678648 tgataatgataaaaa-taatagtaattattatttttattcgaaaatatcacttcccataaatttagcttacggtggttgtgataagaataagaa 29678556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 12002031 - 12002123
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||    
T  12002031 tgataatgataaaaa-taatagtaattattatttttattcgtggatatcacttcccataaatttaacttatgttgattgtgataagaataagaa 12002123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 25477415 - 25477507
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||||||    
T  25477415 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactttctataaatttagcttatggtggttgcgataagaataagaa 25477507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 25496510 - 25496602
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||||||||    
T  25496510 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactttctataaatttaacttatggtggttgtgataagaataagaa 25496602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 30651874 - 30651796
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  30651874 aaaaataatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 30651796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 9179853 - 9179941
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  9179853 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttcgataaatttagcttatggtggttgtgataagaataa 9179941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 19891631 - 19891719
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  19891631 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttctgataagaataa 19891719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 18345368 - 18345289
Alignment:
Q  53 aaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  18345368 aaaaaataatagtaattattatttt-atttgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 18345289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 1934127 - 1934205
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1934127 aaaaataatagtaattattatttt-attagagaatatcactttccataaatttagcttatggtggttgtgataagaataa 1934205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 12361219 - 12361130
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||   |||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  12361219 tgataatgataaaaa-taatagtaattatt---tttattcgagagtatcactttccataaatttagcttatggtggttgtgataagaataagaa 12361130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 9184544 - 9184632
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||||||||||||||||    
T  9184544 tgataatgataaaaa-taatagtaattattatttt-attcgagaataccactttcgataaatttagcttatggtggttgtgataagaataa 9184632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 20103259 - 20103328
Alignment:
Q  68 ttattatttttattcgtgaatatcacttcccataaatttagcttatggtag-ttgtgataagaataagaa 136  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  20103259 ttattatttttagtggtgaatatcactttccataaatttagcttatggtggtttgtgataagaataagaa 20103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17968090 - 17968176
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||| | |||||||| |  |||||||||||||||||||| ||||||||||||||||    
T  17968090 tgataatgataaaaa-taatagtaattattatttt-atttgagaatatcaat--ccataaatttagcttatggtggttgtgataagaataa 17968176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 25637890 - 25637979
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgt-gaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| ||||||||||||||||||| | | |||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  25637890 tgataatgataaaaa-taatagtaattattatttttattcttaggatatcacttctcataaatttagttta-gttagttgtgataagaataa 25637979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 19896897 - 19896852
Alignment:
Q  144 caattgaatttcttatctttcattcattcaaatctaatgagtttgt 189  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||    
T  19896897 caattgaatttcttatatttcattcattcaaattcaatgagtttgt 19896852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 1934003 - 1934047
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  1934003 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 1934047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 9179720 - 9179764
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  9179720 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 9179764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 17967958 - 17968002
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  17967958 aagattaaacatcaagtaattatactttgatctaatgttgtgtga 17968002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 18345518 - 18345474
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  18345518 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 18345474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 20101644 - 20101688
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  20101644 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 20101688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30652016 - 30651972
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  30652016 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 30651972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 32080346 - 32080261
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||||||||| |||| ||||||||| |||||||||  | ||| ||||| |||||| ||| ||||| | | ||||||||||||    
T  32080346 tgataatgataaaaa-taatagtaattattttttttattcaagcataccactttccataatttttgcttacgttggttgtgataaga 32080261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 25477283 - 25477324
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtg 42  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  25477283 aagattaaacatcaaataattatactttgatttaatgttgtg 25477324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 12361347 - 12361303
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  12361347 aagattaaacaccaaataattatactttgatctaatgttgtgtga 12361303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 12798032 - 12797988
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  12798032 aagattaaacaccaaataattatactttgatctaatgttgtgtga 12797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 17974345 - 17974389
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||    
T  17974345 aagattaaacatcaaataattatactttgatctaatgttgtgtga 17974389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 42925811 - 42925871
Alignment:
Q  55 aaaataattgtaattattatt-tttattcgtgaatatcacttcccataaatttagcttatg 114  Q
    ||||||||  ||||||||||| ||||||| || |||||||||||||||| ||||| |||||    
T  42925811 aaaataataataattattattatttattcatggatatcacttcccataattttaggttatg 42925871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 32081301 - 32081383
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32081301 aaaaataatagtaattattatttttattcgagaatatcacttcccataaatttagcttatggtggttgtgataagaataagaa 32081383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 13064936 - 13065027
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  13064936 tgataatgataaaaa-taatagtaattattatttttattcgtgaatatcacttcccat-aatttagcttatggtggttgtgataagaataagaa 13065027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 16422016 - 16421924
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  16422016 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactttccataaatttaacttatggtggttgtgataagaataagaa 16421924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 40408892 - 40408769
Alignment:
Q  64 gtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa-acaattgaatttcttatctt 162  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||  |||||||| |||||  ||||||||||| |||| ||    
T  40408892 gtaattattatttttattagtgaatatcacttcccatacatttagcttatggtggtagtgatagaaataagaataagaattcaattgaattttttatttt 40408793  T
Q  163 tcattcattcaaatctaatgagtt 186  Q
    || |||||||||||  ||||||||    
T  40408792 tctttcattcaaatacaatgagtt 40408769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 19907208 - 19907126
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  19907208 aaaaataatagaaattattatttttattcgtgaatatcacttcccataaatttagcttatgattgttgcgataagaataagaa 19907126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 29349332 - 29349422
Alignment:
Q  44 gataatgataaaaaataattgtaattattatttt-tattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  29349332 gataatgataaaaaataatattaattattattttttattcgtgaatatcatttcccataaatttagcttatggttgttatgataagaataa 29349422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 2820762 - 2820671
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  2820762 tgataatgataaaaa-taatagtaattattatttttatt-gtgaatatcacttcccataaatttagcttatgttggttgtgataagattaagaa 2820671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 51698899 - 51698804
Alignment:
Q  43 tgataatgataaaaaataatt-gtaattattattttt-attcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||| || | ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  51698899 tgataatgataaaaaaaaaatagtaattattattttttattcgagaatatcactttccataaatttagcttatggtggttgtgataagaataagaa 51698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 13060436 - 13060308
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    |||||||||||| || |||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||     |     
T  13060436 tgataatgataacaa-taatagtaattcttatttttatttgagaatatcacttcccataaatttagcttatggtggttgtgataaaaataaga-----at 13060343  T
Q  143 acaattgaatttcttatctttcattcattcaaatc 177  Q
      ||||||||||||||| |||| ||||||||||||    
T  13060342 ttaattgaatttcttatatttccttcattcaaatc 13060308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 39216234 - 39216316
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||| | |||||||||||||||||||    
T  39216234 aaaaataatagtaattattatttttattcgtgtatatcacttcgcataaatttatcttatgttggttgtgataagaataagaa 39216316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 55252614 - 55252522
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| | |||||||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  55252614 tgataatgataaaaa-taatagcaattattatttttattggagaatattactttccataaatttagcttatggtggttgtgataagaataagaa 55252522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 32220690 - 32220821
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||||||||||  |||||||||| |||||||| ||||||||||||||||||     |     
T  32220690 tgataatgataaaaa-taatagtaattattatttttattcg--aatatcacttttcataaatttaacttatggtggttgtgataagaataaga-----at 32220781  T
Q  143 acaattgaatttcttatctttcattcattcaaatctaatg 182  Q
      |||| |||||||||| |||| |||||||||||||||||    
T  32220782 ttaattaaatttcttatatttccttcattcaaatctaatg 32220821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 31274474 - 31274396
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  31274474 aaaaataatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 31274396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 37263699 - 37263777
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37263699 aaaaataatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 37263777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 8694683 - 8694595
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  8694683 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttaggttatggtggttgtgataagaataa 8694595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 33468128 - 33468215
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||     |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  33468128 tgataatgataaaaa-taatagtaattattattttta-----gaatatcacttcccataaatttagcttatggtggttatgataagaataagaa 33468215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 31728493 - 31728579
Alignment:
Q  45 ataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||| |||| |||||||||||||| ||||| |||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  31728493 ataatgataaaaa-taatagtaattattatttt-attcgagaatatcacttttcataaatttagcttatggtggttgtgataagaataa 31728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 37258999 - 37259077
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37258999 aaaaataatagtaattattatttt-attagagaatatcactttccataaatttagcttatggtggttgtgataagaataa 37259077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 33462480 - 33462564
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| ||||||||||||||||     |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  33462480 tgataatgataaaaa-taatagtaattattattttta-----gaatatcacttcccataaatttagcttacggtggttgtgataagaataa 33462564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 5270549 - 5270634
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaa 130  Q
    ||||||||||||||| |||| ||| |||||||||| ||||  ||||||||||| |||||||||||||||||||| |||||||||||||    
T  5270549 tgataatgataaaaa-taatagtagttattatttt-attctcgaatatcactttccataaatttagcttatggtggttgtgataagaa 5270634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 31766842 - 31766754
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||| |||| |||||    
T  31766842 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagtttatggtggttgttataaaaataa 31766754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 5927362 - 5927431
Alignment:
Q  63 tgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |  |||||||||||||||    
T  5927362 tgtaattattatttt-attcgagaatatcactttccataaatttagcttatgatgattgtgataagaataa 5927431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 23094079 - 23093987
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||||||||||||||||||  |  |||||||||| | ||||||||||||||    |||||||||||||||||||    
T  23094079 tgataatgataaaaa-taatagtaattattatttttatttatagatatcacttctcgtaaatttagcttatataggttgtgataagaataagaa 23093987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 12823038 - 12823097
Alignment:
Q  45 ataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatt 105  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||||    
T  12823038 ataatgataaaaa-taatagtaattattatttttattccagaatatcacttcccataaatt 12823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 16948971 - 16948885
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    |||||||||||||||| ||| |||||||||| ||||| || |  |||||| ||||||||| ||||||||||| | ||| ||||||||    
T  16948971 tgataatgataaaaaagaatagtaattattagttttactcattgatatcatttcccataattttagcttatgttggttatgataaga 16948885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 12875374 - 12875290
Alignment:
Q  43 tgataatgataaaaaataattgtaattattattttt-attcgtgaatatcacttcccataaatttagcttatggtagttgtgataa 127  Q
    ||||||||||||| | |||| ||||||||||||||| | || ||||||||||||||||||| ||||| ||||| | ||||||||||    
T  12875374 tgataatgataaaca-taatagtaattattattttttactcatgaatatcacttcccataattttaggttatgttggttgtgataa 12875290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 6943724 - 6943684
Alignment:
Q  64 gtaattattatttttattcgtgaatatcacttcccataaat 104  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  6943724 gtaattattatttttattggtgaatatcacttcccataaat 6943684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 5270417 - 5270461
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  5270417 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 5270461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 6943864 - 6943820
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  6943864 aagattaaacatcaagtaattatactttgatttactgttgtgtga 6943820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 8694815 - 8694771
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  8694815 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 8694771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 16422148 - 16422104
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  16422148 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 16422104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31274616 - 31274572
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  31274616 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 31274572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 37263557 - 37263601
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  37263557 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 37263601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 55252735 - 55252703
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||||||||||||||||||||||||    
T  55252735 caagtaattatactttgatttaatgttgtgtga 55252703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 33467997 - 33468039
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgt 43  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  33467997 aagattaaacaccaagtaattatactttgatctaatgttgtgt 33468039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 5925810 - 5925842
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  5925810 caagtaattatactttgatataatgttgtgtga 5925842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 27183315 - 27183283
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  27183315 caagtaattatactttgatataatgttgtgtga 27183283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31728360 - 31728404
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  31728360 aagattaaacaccaagtaattataatttgatctaatgttgtgtga 31728404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 30147 - 30055
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  30147 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcacttcccataaatttagtttatggtggttgtgataagaataagaa 30055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30279 - 30235
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  30279 aagattaaacaccaagtaattatattttgatctaatgttgtgtga 30235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 20180276 - 20180368
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20180276 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcacttcctataaatttagcttatggtggttgtgataagaataagaa 20180368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 6154558 - 6154647
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  6154558 tgataatgataaaaa-taatagtaattattatttttattcgagaatatcactttacataaatttagcttatggtggttgtgataagaataa 6154647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 39519355 - 39519277
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39519355 aaaaataatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtagttgtgataagaataa 39519277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 39523994 - 39523916
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39523994 aaaaataatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtagttgtgataagaataa 39523916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 26668248 - 26668160
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  26668248 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 26668160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 26939845 - 26939757
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  26939845 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 26939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 37247925 - 37248014
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  37247925 tgataatgataaaaa-taatagtaattattatttttatttgagaatatcactttccataaatttagtttatggtggttgtgataagaataa 37248014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 37537064 - 37537152
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37537064 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 37537152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 37646183 - 37646271
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37646183 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgtgataagaataa 37646271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 12104024 - 12103932
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||    
T  12104024 tgataatgataaaaa-taatagtagttattatttttattcgagaatatcacttctcataaatttagcttatggtgggtgtgataagtataagaa 12103932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 6511755 - 6511850
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaattta---gcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||| | ||||||||||||| |||||||||   ||||||||| |||||||||||||||||||    
T  6511755 tgataatgataaaaa-taatagtaattattatttttatttgagaatatcacttcctataaatttagctgcttatggtggttgtgataagaataagaa 6511850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 7452725 - 7452636
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| |||||| | || |||||||||||||||||||| ||||||||||||||||    
T  7452725 tgataatgataaaaattaatagtaattattatttt-attcgagaatattattttccataaatttagcttatggtggttgtgataagaataa 7452636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 29167099 - 29167187
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||||||||  ||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||    
T  29167099 tgataatgataaaaac-aatagtaattattatttt-attcgagaatatcactttccataaatttagcttatggtggttgagataagaataa 29167187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 36424598 - 36424520
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||  ||||||||| ||| ||||| |||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  36424598 aaaaataatattaattattaattt-attcgagaatatcactttacataaatttagcttatggtggttgtgataagaataa 36424520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 10759356 - 10759399
Alignment:
Q  2 aagattaaacacaagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  10759356 aagattaaacacaagtaattatattttgatttaatgttgtgtga 10759399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 36430478 - 36430400
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||| ||| ||||| |||||||||||  ||||||||||| ||||| | ||||||||||||||||    
T  36430478 aaaaataatagtaattattaattt-attcgagaatatcacttttcataaatttagtttatgttggttgtgataagaataa 36430400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 16115381 - 16115446
Alignment:
Q  71 ttatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||| |||||||| |||||||||||||||||||||||||| | | |||||||||| || |||||    
T  16115381 ttatttatattcgtggatatcacttcccataaatttagcttacgttggttgtgataaaaacaagaa 16115446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 29166967 - 29167011
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  29166967 aagattaaacaccaagtaattatactttgatttaatgttgtgtga 29167011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 15413861 - 15413910
Alignment:
Q  87 atatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||||||    
T  15413861 atatcacttcccataaatttaacttacgttggttgtgataagaataagaa 15413910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 23757158 - 23757202
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  23757158 aagattaaacaccaagtaattatacttagatttaatgttgtgtga 23757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 23822614 - 23822658
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  23822614 aagattaaacaccaagtaattatacttagatttaatgttgtgtga 23822658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 37247793 - 37247837
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  37247793 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 37247837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 37536931 - 37536975
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  37536931 aagattaaacatcaagtaattatactttgatataatgttgtgtga 37536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 37646049 - 37646093
Alignment:
Q  2 aagattaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  37646049 aagattaaacatcaagtaattatactttgatctaatgttgtgtga 37646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 40150297 - 40150253
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  40150297 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 40150253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 4872846 - 4872771
Alignment:
Q  55 aaaataattgtaattattatt-tttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataaga 129  Q
    ||||||||  ||||||||||| ||||||| || |||||||| ||||||| ||||| ||||| | ||||||||||||    
T  4872846 aaaataataataattattattctttattcatggatatcactccccataactttaggttatgtttgttgtgataaga 4872771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 35679055 - 35679117
Alignment:
Q  74 tttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| || |||| ||||||||||| ||||| ||||| | |||||||||||| ||||||    
T  35679055 tttttattcatggatattacttcccataattttaggttatgtttgttgtgataagattaagaa 35679117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 10759487 - 10759531
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaat 88  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  10759487 tgataatgataaaaa-taatagtaattattatttttattcgagaat 10759531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7452857 - 7452813
Alignment:
Q  2 aagattaaacacaa-gtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||    
T  7452857 aagattaaacacaaagtaattatactctgatctaatgttgtgtga 7452813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 20180149 - 20180193
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||||| || |||||||||||||    
T  20180149 aagattaaacaccaagtaattatactttaatctaatgttgtgtga 20180193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26668380 - 26668336
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  26668380 aagattaaacaccaaataattatactttgatctaatgttgtgtga 26668336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26939977 - 26939933
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  26939977 aagattaaacaccaaataattatactttgatctaatgttgtgtga 26939933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 36424740 - 36424696
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  36424740 aagattaaacaccaagtaattatactatgatctaatgttgtgtga 36424696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 39519487 - 39519443
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||    
T  39519487 aagattaaacaccaagtaaatatactttgatctaatgttgtgtga 39519443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 15950711 - 15950793
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  15950711 aaaaataatagtaattattatttttattcgagaatatcacttcccatatatttagcttatagtagttgtgataagaataagaa 15950793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 23547730 - 23547861
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    ||||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||  |||||||||| ||||||| ||||||||||||||||||| |||||    
T  23547730 tgataatgataaaaa-taatagtaattattgtttttattcatgaatatcatttct-ataaatttagtttatggtggttgtgataagaataagaataagaa 23547827  T
Q  143 -acaattgaatttcttatctttcattcattcaaa 175  Q
      |||| |||||||||||||||| ||||||||||    
T  23547828 ttcaatggaatttcttatctttccttcattcaaa 23547861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 1910073 - 1910202
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaagaagaa 142  Q
    |||||||||||||||||||| ||||||  |||||||||||| |||||||||||| ||||||||||  ||||||| ||||||||||||||||||     |     
T  1910073 tgataatgataaaaaataatagtaattgctatttttattcgagaatatcacttctcataaatttaatttatggtggttgtgataagaataaga-----at 1910167  T
Q  143 acaattgaatttcttatctttcattcattcaaatc 177  Q
      ||||||||||||||| |||| ||||||||||||    
T  1910168 ttaattgaatttcttatatttccttcattcaaatc 1910202  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 38181408 - 38181500
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||| |||| ||| |||||||||||||||||||    
T  38181408 tgataatgataaaaa-taatagtaattattatttttattcgagaataccacttcccataaatttaacttagggtggttgtgataagaataagaa 38181500  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 44925047 - 44925139
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||  |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  44925047 tgataatgataaaaa-taacagtaattattatttttattcgagaatatcatttcccataaatttatcttatggtggttgtgataagaataagaa 44925139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 26780074 - 26779982
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||| |||| |||||||||| |||||| | |||||||||||||||||||    
T  26780074 tgataatgataaaaac-aatagtaattattatttttattcgtgaatatctcttctcataaatttaacttatgatggttgtgataagaataagaa 26779982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 17027101 - 17027019
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||  ||||||||||||||||||| |||||||||||  ||||||||||||||| ||| |||||||||||||||||||    
T  17027101 aaaaataatactaattattatttttattcgagaatatcacttttcataaatttagcttaaggtggttgtgataagaataagaa 17027019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 17557593 - 17557511
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||  ||||||||||||||||||| |||||||||||  ||||||||||||||| ||| |||||||||||||||||||    
T  17557593 aaaaataatactaattattatttttattcgagaatatcacttttcataaatttagcttaaggtggttgtgataagaataagaa 17557511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 1808421 - 1808329
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||| |  ||||||| || | |||||||||||||||||| |||||||||||||||||||    
T  1808421 tgataatgataaaaa-taatagtaattattatttttatttgaaaatatcattttctataaatttagcttatggtggttgtgataagaataagaa 1808329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 22714139 - 22714216
Alignment:
Q  59 taattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||| | | |||||||||||||||||    
T  22714139 taatagtaattattatttttattcatggatatcacttcccataaatttagcttatgttggctgtgataagaataagaa 22714216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 40125030 - 40125108
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  40125030 aaaaataatagtaattattatttt-atttgagaatatcactttccataaatttagcttatggttgttgtgataagaataa 40125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 33417500 - 33417412
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  33417500 tgataatgataaaaa-taatagtaattattatttt-attcgagaatatcactttctataaatttagcttatggcggttgtgataagaataa 33417412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 19168712 - 19168601
Alignment:
Q  67 attattatttttattcgtgaatatcacttcccataaatttagcttatgg--tagttgtgataagaataagaagaagaaacaattgaatttcttatctttc 164  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||  | ||||||||||||||||||     |   ||||||||||||||| ||||    
T  19168712 attattatttttattctagaatatcacttcccataaatttagcttatggcatggttgtgataagaataaga-----atttaattgaatttcttatatttc 19168618  T
Q  165 attcattcaaatctaat 181  Q
     || |||||||||||||    
T  19168617 ctttattcaaatctaat 19168601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 2966553 - 2966463
Alignment:
Q  45 ataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||| ||||  || ||| | |||||||||||||    
T  2966553 ataatgataaaaatta-tagtaattattatttttattcgtgaatatcacttcctataaatttaccttacagtggttctaataagaataagaa 2966463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 18875511 - 18875603
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||| ||| |||| ||||||||| |||||||||| |||||||| || ||||||||||| |||||| | ||||||||| |||||||||    
T  18875511 tgataatgatacaaa-taatagtaattattgtttttattcgagaatatcattttccataaatttaacttatgatggttgtgatatgaataagaa 18875603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 24672471 - 24672537
Alignment:
Q  70 attatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||| | ||||| |||||||||||||    
T  24672471 attatttttattcgtggatatcacttcctataaatgtagtttatgttggttgtcataagaataagaa 24672537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 1808552 - 1808508
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  1808552 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 1808508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 1909941 - 1909985
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  1909941 aagattaaacaccaagtaattatactttgatctaatgttgtgtga 1909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 17026833 - 17026796
Alignment:
Q  99 ataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  17026833 ataaatttagcttaaggtggttgtgataagaataagaa 17026796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 17557325 - 17557288
Alignment:
Q  99 ataaatttagcttatggtagttgtgataagaataagaa 136  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  17557325 ataaatttagcttaaggtggttgtgataagaataagaa 17557288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38181279 - 38181320
Alignment:
Q  5 attaaaca-caagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  38181279 attaaacatcaagtaattatactttgatctaatgttgtgtga 38181320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 17021345 - 17021313
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  17021345 caagtaattatactttgatctaatgttgtgtga 17021313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 17551782 - 17551750
Alignment:
Q  13 caagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||| |||||||||||||    
T  17551782 caagtaattatactttgatctaatgttgtgtga 17551750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26780205 - 26780161
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||    
T  26780205 aagattaaacactaagtaattatactctaatttaatgttgtgtga 26780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 40124888 - 40124932
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||    
T  40124888 aagattaaacaccaagtaaatatactttgatctaatgttgtgtga 40124932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 36092 - 36001
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataagaa 136  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36092 tgataatgataaaaa-taatagtaattattatttttatttgtgaatatcacttcccataaatttagc-tatggtggttgtgataagaataagaa 36001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 4942 - 4872
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttat 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4942 tgataatgataaaaaataatagtaattattatttttattcgtgaatatcacttcccataaatttagtttat 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 5071 - 5027
Alignment:
Q  2 aagattaaacacaa-gtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  5071 aagattaaacaccacgtaattatactttgatctaatgttgtgtga 5027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 8079 - 7990
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||  ||||||||||||||||||  ||||||||||||||||    
T  8079 tgataatgataaaaaataatagtaattattatttt-attcgagaatatcacttttcataaatttagcttatggcggttgtgataagaataa 7990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 8211 - 8167
Alignment:
Q  2 aagattaaacac-aagtaattatactttgatttaatgttgtgtga 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  8211 aagattaaacaccaagtaattatactttgatttaatgttgtgtga 8167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 5024 - 4946
Alignment:
Q  54 aaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||| |||||||||||||| ||| | |||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  5024 aaaaataatagtaattattatttt-attagagaatattactttccataaatttagcttatggtggttgtgataagaataa 4946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 443065 - 443154
Alignment:
Q  43 tgataatgataaaaaataattgtaattattatttttattcgtgaatatcacttcccataaatttagcttatggtagttgtgataagaataa 133  Q
    ||||||||||||||| |||| |||||||||||||||||| | |||||||| || | ||||||||| |||||| | |||||||||| |||||    
T  443065 tgataatgataaaaa-taatagtaattattatttttattagagaatatcattttcaataaatttaacttatgatggttgtgataaaaataa 443154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 64889 - 64932
Alignment:
Q  2 aagattaaacacaagtaattatactttgatttaatgttgtgtga 45  Q
    ||||||||||||||||||||| |||||||| || ||||||||||    
T  64889 aagattaaacacaagtaattaaactttgatctagtgttgtgtga 64932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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