View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3532_high_4 (Length: 270)
Name: NF3532_high_4
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 50307439 - 50307200
Alignment:
| Q |
19 |
atcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50307439 |
atcatgaggttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagcattatcattgtttgtgata |
50307340 |
T |
|
| Q |
119 |
gcttctttaacttttggttctgtcttagtttcaacaacattgattgtttctgttgtttcttcattattagtactactttttgtagcaagattctttgaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50307339 |
gcttctttaacttttggttctgtcttagtttcaacaacattgattgtttctgttgtttcttc---attagtactactttttgtagcaagattctttgaac |
50307243 |
T |
|
| Q |
219 |
tactcttcttagtagtaccttgttttggagtctttgatgatgt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50307242 |
tactcttcttagtagtaccttgttttggagtctttgatgatgt |
50307200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 50307676 - 50307605
Alignment:
| Q |
28 |
ttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttcttctacttccccagc |
99 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
50307676 |
ttgattaatctcaggtacattttcaacttgatcacgttctagaatattctcaattttttctacttccccagc |
50307605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 50307737 - 50307688
Alignment:
| Q |
48 |
tttcaacttgatcatgttcttgaatattctcaatttcttctacttcccca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50307737 |
tttcaacttgatcatgttcttgaatattctcaattttttctacttcccca |
50307688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 50307514 - 50307448
Alignment:
| Q |
28 |
ttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttcttctacttcc |
94 |
Q |
| |
|
||||||||||||| | | | |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
50307514 |
ttgattaatctcaggtatattttcaacttgatcacgttcttgaatattctcaattttttctacttcc |
50307448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 50307595 - 50307529
Alignment:
| Q |
28 |
ttgattaatctcatgcacactttcaacttgatcatgttcttgaatattctcaatttcttctacttcc |
94 |
Q |
| |
|
||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
50307595 |
ttgattaatctcaggtacattatcaacttgatcgcgttcttgaatattctcaattttttctacttcc |
50307529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University