View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_high_6 (Length: 250)
Name: NF3532_high_6
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 14068681 - 14068444
Alignment:
| Q |
12 |
atgaataatagaattttcgacaacaaagaagtccatgtgccctaattactagataaaattaagctacaatctttttagtggttgaaggtnnnnnnntcgt |
111 |
Q |
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| T |
14068681 |
atgaataatagaattttcaacaacaaagaagtccatgtgccctaattactagataaaattaagctataatctttttggtggttgaaggtaaaaaatt-gt |
14068583 |
T |
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| Q |
112 |
aattttacttttgattatcatgttttctggctttattcttttaatgaacatgggttacactatgtagtttttcttatattcttgaaatattctttttaat |
211 |
Q |
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| T |
14068582 |
aattttacttttgattatcatgtttgctggctttattcttttaatgtacatgggttacactatgtagtttttcttatattcttgaaatattctttttaat |
14068483 |
T |
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| Q |
212 |
aatccaactannnnnnnnataaggagtaactcttaattt |
250 |
Q |
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| T |
14068482 |
aatccaactattttttttataaggagtaactcttaattt |
14068444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 881933 - 882005
Alignment:
| Q |
15 |
aataatagaattttcgacaacaaagaagtccatgtgccctaattactagataaaattaagctacaatcttttt |
87 |
Q |
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| T |
881933 |
aataataaaattttcgacaacaaagaattctagttgtctcaattgcttgataaaattaagctactatcttttt |
882005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 9145623 - 9145662
Alignment:
| Q |
60 |
ctagataaaattaagctacaatctttttagtggttgaagg |
99 |
Q |
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| T |
9145623 |
ctagataaaattaagctccaatctttttggtggttgaagg |
9145662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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