View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_low_1 (Length: 518)
Name: NF3532_low_1
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 85 - 504
Target Start/End: Original strand, 48230959 - 48231378
Alignment:
| Q |
85 |
gcagcaatgtccaacccatacttctcacaattttcattttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcag |
184 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230959 |
gcagcaatgtccaacccatgcttctcacaattttcattttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcag |
48231058 |
T |
|
| Q |
185 |
caatgtccaacccatgcttctcaaaaatttcattttccttcttaataggaggaattctccctttctctatgttagacctatgtctgtttcgaaaagaact |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231059 |
caatgtccaacccatgcttctcaaaaatttcattttccttcttaataggaggaattctccctttctctatgttagacctatgtctgtttcgaaaagaact |
48231158 |
T |
|
| Q |
285 |
gtcagtccgaccttttagtaaagtggaataatctcgatccgacctaatacgtttccacatttcaggaccaattttgagcccaagttttctatatttgtca |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231159 |
gtcagtccgaccttttagtaaagtggaataatctcgatccgacctaatacgtttccacatttcaggaccaattttgagcccaagttttctatatttgtca |
48231258 |
T |
|
| Q |
385 |
attgcatattctaagccatcactttgttcattcgtataaagtgatccagcctttgagcctcctgcggtgtctgcatctgcgctcttgcttacctgcaatg |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48231259 |
attgcatattctaagccatcactttgttcattcgtataaagtgatccagcctttgagcctcctgcggtgtctgcatctgcgctcttgcttacctgcaatg |
48231358 |
T |
|
| Q |
485 |
aatcggtgtctgagtctgtg |
504 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48231359 |
aatcggtgtctgagtctgtg |
48231378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 85 - 504
Target Start/End: Original strand, 48235999 - 48236418
Alignment:
| Q |
85 |
gcagcaatgtccaacccatacttctcacaattttcattttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcag |
184 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48235999 |
gcagcaatgtccaacccatgcttctcacaattttcattttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcag |
48236098 |
T |
|
| Q |
185 |
caatgtccaacccatgcttctcaaaaatttcattttccttcttaataggaggaattctccctttctctatgttagacctatgtctgtttcgaaaagaact |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236099 |
caatgtccaacccatgcttctcaaaaatttcattttccttcttaataggaggaattctccctttctctatgttagacctatgtctgtttcgaaaagaact |
48236198 |
T |
|
| Q |
285 |
gtcagtccgaccttttagtaaagtggaataatctcgatccgacctaatacgtttccacatttcaggaccaattttgagcccaagttttctatatttgtca |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48236199 |
gtcagtccgaccttttagtaaagtggaataatctcgatccgacctaatacgtttccacatttcaggaccaattttgagcccaagttttctatatttgtca |
48236298 |
T |
|
| Q |
385 |
attgcatattctaagccatcactttgttcattcgtataaagtgatccagcctttgagcctcctgcggtgtctgcatctgcgctcttgcttacctgcaatg |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48236299 |
attgcatattctaagccatcactttgttcattcgtataaagtgatccagcctttgagcctcctgcggtgtctgcatctgcgctcttgcttacctgcaatg |
48236398 |
T |
|
| Q |
485 |
aatcggtgtctgagtctgtg |
504 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48236399 |
aatcggtgtctgagtctgtg |
48236418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 48230798 - 48231004
Alignment:
| Q |
20 |
ttgtgacctcattggcaataactgattgattgatcttattttcctcttggatcacctttctaatagcagcaatgtccaacccatacttctcacaattttc |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48230798 |
ttgtgacctccttggcaataactgattgattgatcttattttcctcttggatcacctttctaatagcagcaatgtccaacccatacttctcagaattttc |
48230897 |
T |
|
| Q |
120 |
attttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcagcaatgtccaacccatgcttctcaaaaatttcattt |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||||||||||||||||| || |||||||| |
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| T |
48230898 |
attttccttctccaccttttcctcattcctcttattctcctcttggtttatctttctgtatgcagcaatgtccaacccatgcttctcacaattttcattt |
48230997 |
T |
|
| Q |
220 |
tccttct |
226 |
Q |
| |
|
||||||| |
|
|
| T |
48230998 |
tccttct |
48231004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 48235838 - 48236044
Alignment:
| Q |
20 |
ttgtgacctcattggcaataactgattgattgatcttattttcctcttggatcacctttctaatagcagcaatgtccaacccatacttctcacaattttc |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48235838 |
ttgtgacctccttggcaataactgattgattgatcttattttcctcttggatcacctttctaatagcagcaatgtccaacccatacttctcagaattttc |
48235937 |
T |
|
| Q |
120 |
attttccttctccaccttttcctcattcctcttatccttctcttggatcatctttctgtgtgcagcaatgtccaacccatgcttctcaaaaatttcattt |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||||||||||||||||| || |||||||| |
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|
| T |
48235938 |
attttccttctccaccttttcctcattcctcttattctcctcttggtttatctttctgtatgcagcaatgtccaacccatgcttctcacaattttcattt |
48236037 |
T |
|
| Q |
220 |
tccttct |
226 |
Q |
| |
|
||||||| |
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|
| T |
48236038 |
tccttct |
48236044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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