View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3532_low_11 (Length: 248)
Name: NF3532_low_11
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 33219870 - 33219636
Alignment:
| Q |
1 |
agaggaggaaactggttttgattttgagtttgaaaatgagggggagggtttggagaatgagagtgggtcgtgttgggctgatttacgtcaatgtgcttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33219870 |
agaggaggaaactggttttgattttgagtttgaaaatgagagggagggtttggagaatgagagtgggccgtgttgggctgatttacgtcaatgtgcttcg |
33219771 |
T |
|
| Q |
101 |
tatggtagtggcgggcttgttcgagattttgaaccattctacttgggtcggtatgggtctgctccacttctgcccattactagtgtaatgtgaacttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33219770 |
tatggtagtggcgggcttgttcgagattttgaaccattctacttgggtcggtatgggtctgctccacttctgcccattactagtgtaatgtgaacttgtt |
33219671 |
T |
|
| Q |
201 |
cttctactctgtctgtctgctgtgaactgtgttct |
235 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33219670 |
cttctactctgtctgtctggtgtgaactgtgttct |
33219636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University