View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_low_12 (Length: 242)
Name: NF3532_low_12
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 33658654 - 33658853
Alignment:
| Q |
44 |
tacaaacatacaaacactctt-----aaccgtgtcttcgtatcgtacacatgtcagtgtccaacatttatgcgacactcatacggcatacgtccgataac |
138 |
Q |
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| T |
33658654 |
tacaaacatacaaacactctttgattagccgtgtctttgtatcgtacacatgtcagtgtccaacatttgtgcgacactcatacaacatacgtccgataac |
33658753 |
T |
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| Q |
139 |
tcaaaaagaaagggtcctacaaaattatttttattatattcttacacaattttaacactctttagacacatgatcatagacttattagacataatatttt |
238 |
Q |
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| T |
33658754 |
tca----gaaagtgtcctacaaaattatttttattatattcttacacaattttaacactctttaaacacatgatcatagactttttagacataatatttt |
33658849 |
T |
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