View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_low_2 (Length: 517)
Name: NF3532_low_2
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 232 - 511
Target Start/End: Complemental strand, 33659145 - 33658865
Alignment:
| Q |
232 |
agttaatttaactgacaattttatcaaacactatataaattaagtagtaaaatattttcgaaa-gtnnnnnnnnnnnnntaaatggtcgaactaacaaca |
330 |
Q |
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| T |
33659145 |
agttaattcaactaccaattttatcaaacactatataaataaagtagtaaaatatttttgaaaagtaaaaaacaaaaaataaatggtcgaactaacaaca |
33659046 |
T |
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| Q |
331 |
attcaacatggttcaaccctggtacattctcgaggggttagttagcttaaccggtttaagctaaaggataaaaagtttgaggtattgagttcaaacacaa |
430 |
Q |
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| T |
33659045 |
attcaacatggttcaaccctggtacattctcgaggggttagttagcttaactggtttaagctaagggataaaaattttgaggtattgagttcaaacccga |
33658946 |
T |
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| Q |
431 |
atgaagnnnnnnntaatattaatttaacaactaattaataacatttttaattctagaaaaacgtacattctagttcgacca |
511 |
Q |
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| T |
33658945 |
atgaagaaaaaaataatattaatctaacaactaattaataacatttttcattctaaaaaaacgtacattctagttcgacca |
33658865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 33659375 - 33659237
Alignment:
| Q |
3 |
tataatagataacttataacctttttcaaaagaaaaaacggataacttatgagcttatttaataaaaatagatttgtttggtaacaacatttttgctcat |
102 |
Q |
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| T |
33659375 |
tataatagataacttataacctttttcaaaagaaaaaacggataacttatgagcttatataataaaaatagatttgtttggtaacaacttttttgctcat |
33659276 |
T |
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| Q |
103 |
gggcttacatcgtgttttgataacttacttcaagtatac |
141 |
Q |
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| T |
33659275 |
gggcttacatcgtgttttgataacttacttcaagtatac |
33659237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 41714279 - 41714328
Alignment:
| Q |
445 |
aatattaatttaacaactaattaataacatttttaattctagaaaaacgt |
494 |
Q |
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| T |
41714279 |
aatattaatttaataattaattactaacatttttcattctaaaaaaacgt |
41714328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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