View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_low_3 (Length: 474)
Name: NF3532_low_3
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 41348339 - 41348628
Alignment:
| Q |
22 |
cgacaaaccgacagctgcagcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaa |
121 |
Q |
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| T |
41348339 |
cgacaaaccgacagctgcagcagcaacacagagataactcatatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaa |
41348438 |
T |
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| Q |
122 |
atcaagtaannnnnnnnnggacgtgctaacttatgcctnnnnnnnnnnnnntaaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaa |
221 |
Q |
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| T |
41348439 |
atcaagtaatttttttt-ggacgtgctaccttatgcctaaaaaaacaaaaataaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaa |
41348537 |
T |
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| Q |
222 |
tcagctctaatgaaagaaattagaagccaataaaattctgttttattgcacttattttttatactatcggttagcttatctgtgttgtact |
312 |
Q |
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| T |
41348538 |
tcagctctaatgaaagaaattagaagccaataaaattctgttttattgcacttattttttatactatcggttagcatatctgtgttgtact |
41348628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 41348686 - 41348785
Alignment:
| Q |
369 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
468 |
Q |
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| T |
41348686 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaacatgacagaaatggaacatgctccgatgccaagtattcatatcac |
41348785 |
T |
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