View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3532_low_5 (Length: 303)
Name: NF3532_low_5
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 13881981 - 13882261
Alignment:
| Q |
1 |
acatgctttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13881981 |
acatgctttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatcagcttcaccttcact |
13882080 |
T |
|
| Q |
101 |
ttcagccttattatcatgttctgctgcttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcct |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13882081 |
ttcagccttattatcatgttct---------gcatcctcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcct |
13882171 |
T |
|
| Q |
201 |
ccaatgacctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccacaggtt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13882172 |
ccaatgacctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttccccaggtt |
13882261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 16024464 - 16024735
Alignment:
| Q |
23 |
cgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
122 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
|
| Q |
123 |
gc-------tgct--tct-----gca-tcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatga |
207 |
Q |
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| |||| ||| ||| ||||| | ||||| ||||| ||||||||||||||| | ||| |||||| ||||| ||| |||| |||| |
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| T |
16024563 |
ccatcatcatgctcttcttgagagcactcctctc--catcagcagattcacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatga |
16024660 |
T |
|
| Q |
208 |
cctctgaggactttcttccccttcatcatcagcatccatgtagttttctcctctggcttcaccacaaacttcttc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
16024661 |
cctctgaggactttcttccccttcatcatcagcatctgcataattttctcctctggcttcaccacaaacttcttc |
16024735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 13883806 - 13884011
Alignment:
| Q |
30 |
aaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
129 |
Q |
| |
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||||||||||| || |||||||| ||||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| || | |
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| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
|
| Q |
130 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
224 |
Q |
| |
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| ||| || | |||||| ||||| |||||||||||||||| |||||||||||| ||||| || |||||| |||||||||||||||| |||| |
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| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
|
| Q |
225 |
ccccttc |
231 |
Q |
| |
|
||||||| |
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| T |
13884005 |
ccccttc |
13884011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 283
Target Start/End: Complemental strand, 14397598 - 14397456
Alignment:
| Q |
141 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatcatcagc |
240 |
Q |
| |
|
|||||| | |||||| ||||| |||||| || ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| | |
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| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcattaag |
14397499 |
T |
|
| Q |
241 |
atccatgtagttttctcctctggcttcaccacaaacttcttcc |
283 |
Q |
| |
|
|||||| || |||||| ||| |||||||||||||||||||| |
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|
| T |
14397498 |
atccatataattttcttctcctccttcaccacaaacttcttcc |
14397456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 283
Target Start/End: Complemental strand, 14391312 - 14391173
Alignment:
| Q |
141 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttct-tccccttcatcatcag |
239 |
Q |
| |
|
|||||||| |||||| | |||||||||||| | |||||| |||| ||||| ||||||| ||||||| |||||||||||| |||||||||||| |
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| T |
14391312 |
caccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctacccccttcatcat--- |
14391216 |
T |
|
| Q |
240 |
catccatgtagttttctcctctggcttcaccacaaacttcttcc |
283 |
Q |
| |
|
||||| || |||||| ||||||||| |||||||| ||||||| |
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|
| T |
14391215 |
-ttccatataattttcttctctggctttaccacaaatttcttcc |
14391173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 14393221 - 14393132
Alignment:
| Q |
28 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | | |||| | |||| | | ||||||||||||||||||||||||| ||||| ||||| |
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| T |
14393221 |
agaaaatggcaatgacattccatctccttcaac---aggggcattagccatcat--ttagcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 14393043 - 14393011
Alignment:
| Q |
208 |
cctctgaggactttcttccccttcatcatcagc |
240 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
14393043 |
cctccgaggactttcttccccttcatcatcagc |
14393011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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