View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3532_low_8 (Length: 254)

Name: NF3532_low_8
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3532_low_8
NF3532_low_8
[»] scaffold0277 (2 HSPs)
scaffold0277 (15-254)||(13817-14056)
scaffold0277 (15-254)||(4856-5100)
[»] chr6 (58 HSPs)
chr6 (15-254)||(28780902-28781141)
chr6 (15-254)||(26655752-26655991)
chr6 (15-254)||(26761723-26761962)
chr6 (16-254)||(27725030-27725267)
chr6 (15-254)||(27228997-27229234)
chr6 (35-254)||(27611187-27611406)
chr6 (15-254)||(27718564-27718803)
chr6 (15-254)||(28786041-28786280)
chr6 (15-254)||(27604890-27605135)
chr6 (15-254)||(26802201-26802444)
chr6 (26-254)||(27698679-27698906)
chr6 (37-254)||(28792184-28792401)
chr6 (15-254)||(27338250-27338482)
chr6 (15-254)||(27398990-27399222)
chr6 (42-244)||(31284078-31284280)
chr6 (81-244)||(26622805-26622968)
chr6 (81-244)||(26728783-26728946)
chr6 (84-254)||(27593205-27593375)
chr6 (133-254)||(27531382-27531503)
chr6 (15-242)||(27678717-27678936)
chr6 (20-250)||(27427792-27428020)
chr6 (112-254)||(26884023-26884165)
chr6 (15-241)||(27706600-27706818)
chr6 (35-244)||(26823629-26823832)
chr6 (82-244)||(26861446-26861608)
chr6 (84-241)||(27677812-27677969)
chr6 (78-244)||(26646299-26646471)
chr6 (78-244)||(26752267-26752439)
chr6 (16-110)||(25538338-25538431)
chr6 (16-111)||(26055724-26055818)
chr6 (16-110)||(25481540-25481633)
chr6 (16-110)||(26048643-26048736)
chr6 (16-110)||(26069812-26069905)
chr6 (16-110)||(26075694-26075787)
chr6 (16-110)||(26142663-26142756)
chr6 (146-254)||(25481636-25481744)
chr6 (146-254)||(25579613-25579721)
chr6 (146-254)||(26048739-26048847)
chr6 (146-254)||(26055820-26055928)
chr6 (146-254)||(26069908-26070016)
chr6 (146-254)||(26075790-26075898)
chr6 (146-254)||(26142759-26142867)
chr6 (66-110)||(25579566-25579610)
chr6 (86-212)||(28098596-28098725)
chr6 (86-202)||(26342171-26342290)
chr6 (146-254)||(25538434-25538542)
chr6 (184-254)||(26848592-26848662)
chr6 (198-247)||(27665309-27665358)
chr6 (114-247)||(28325343-28325476)
chr6 (171-247)||(27214336-27214412)
chr6 (171-247)||(27234816-27234892)
chr6 (183-247)||(29825958-29826022)
chr6 (147-246)||(28234459-28234558)
chr6 (90-156)||(26018770-26018836)
chr6 (90-156)||(26139474-26139540)
chr6 (182-247)||(25071589-25071654)
chr6 (147-204)||(28226845-28226902)
chr6 (150-246)||(28242702-28242798)
[»] scaffold0349 (3 HSPs)
scaffold0349 (16-254)||(3607-3844)
scaffold0349 (26-254)||(14540-14767)
scaffold0349 (15-179)||(8061-8225)
[»] scaffold1254 (1 HSPs)
scaffold1254 (15-254)||(102-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (15-254)||(7295-7527)
[»] chr4 (8 HSPs)
chr4 (17-245)||(18699581-18699807)
chr4 (15-245)||(18655658-18655886)
chr4 (15-245)||(18731685-18731913)
chr4 (15-245)||(18679748-18679976)
chr4 (81-245)||(18724266-18724430)
chr4 (20-250)||(17989226-17989454)
chr4 (20-250)||(18073535-18073763)
chr4 (156-246)||(5091147-5091237)
[»] chr1 (3 HSPs)
chr1 (53-244)||(28164544-28164735)
chr1 (58-244)||(28127862-28128042)
chr1 (73-244)||(268539-268711)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-250)||(59343-59571)
[»] chr8 (2 HSPs)
chr8 (86-244)||(29273965-29274123)
chr8 (134-241)||(31903733-31903840)
[»] scaffold0019 (1 HSPs)
scaffold0019 (114-246)||(58475-58607)
[»] scaffold0038 (4 HSPs)
scaffold0038 (114-247)||(116658-116791)
scaffold0038 (147-246)||(34620-34719)
scaffold0038 (147-204)||(27343-27400)
scaffold0038 (150-246)||(42864-42960)
[»] scaffold0713 (1 HSPs)
scaffold0713 (90-156)||(5916-5982)


Alignment Details
Target: scaffold0277 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 14056 - 13817
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||  | |||||||||||||| |||| || |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  14056 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcctctt 13957  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  13956 cctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttac 13857  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  13856 tgacaagggaatcaaaaccttcattgatgacaatgatctt 13817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 5100 - 4856
Alignment:
Q  15 cacagaccacaaaaacttattcatt-----catattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttc 109  Q
    |||||||||||||||||||||||||     ||||||||| |||| || |||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  5100 cacagaccacaaaaacttattcattaaattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 5001  T
Q  110 ctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggct 209  Q
    ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  5000 ctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggct 4901  T
Q  210 cttactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  4900 cttactgacaagggaatcaaaaccttcattgatgacaatgatctt 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 28780902 - 28781141
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||  | |||||||||||||| |||| || |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  28780902 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttcctctt 28781001  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  28781002 cctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttac 28781101  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  28781102 tgacaagggaatcaaaaccttcattgatgacaatgatctt 28781141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 26655752 - 26655991
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctcat 26655851  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||||||||||   || |  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||     
T  26655852 cctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttat 26655951  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||| |||||||||||||| |||||||||||||||||||||    
T  26655952 tgataagggaatccatactttcattgatgacaatgatctt 26655991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 26761723 - 26761962
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttcctcat 26761822  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||||||||||   || |  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||     
T  26761823 cctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttat 26761922  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||| |||||||||||||| |||||||||||||||||||||    
T  26761923 tgataagggaatccatactttcattgatgacaatgatctt 26761962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 27725267 - 27725030
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttc 115  Q
    |||||||||||||| |||  |||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||| |||||||||||||| ||    
T  27725267 acagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcctcatc 27725169  T
Q  116 ctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttact 215  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  27725168 ctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttact 27725069  T
Q  216 gacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27725068 gacaagggaatccataccttcattgatgacaatgatctt 27725030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 27228997 - 27229234
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||| ||||||||||| || |||||||||||||||||||  | ||||||||  |||||||||||| |||| |||||||||||| ||||||||||||||||    
T  27228997 cacataccacaaaaacatactcattcatattctgcattctaaaactctttt--catccaatttctctcaagtctcatggctatacaatcaccttcctctt 27229094  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    ||||||||||||||| |  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  27229095 cctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttac 27229194  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27229195 tgacaagggaatccataccttcattgatgacaatgatctt 27229234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 254
Target Start/End: Complemental strand, 27611406 - 27611187
Alignment:
Q  35 tcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctataca 134  Q
    ||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||| |||||||||||||||  |    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatgga 27611307  T
Q  135 ttcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccatacct 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  27611306 ttcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccatacct 27611207  T
Q  235 tcattgatgacaatgatctt 254  Q
    ||||||||||||||||||||    
T  27611206 tcattgatgacaatgatctt 27611187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 27718803 - 27718564
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||||| |||||||| | | ||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcctcat 27718704  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||| ||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||    
T  27718703 cctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttac 27718604  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27718603 tgacaagggaatccataccttcattgatgacaatgatctt 27718564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 28786041 - 28786280
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||  | |||||||||||||| |||| || |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |    
T  28786041 cacagaccacaaaaacaaactcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcat 28786140  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||    
T  28786141 cctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttac 28786240  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  28786241 tgacaagggaatcaaaaccttcattgatgacaatgatctt 28786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 27605135 - 27604890
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttcctcat 27605036  T
Q  115 cctc------ttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggc 208  Q
    ||||      ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||| |||||||||||||||||    
T  27605035 cctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggc 27604936  T
Q  209 tcttactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  27604935 tcttactgacaagggaattcataccttcattgatgaaaatgatctt 27604890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 26802201 - 26802444
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactctttt----ttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    ||||||||||||||||||| ||||||||||||||||||| || ||||||||    ||||||||||||||  ||||| ||||||||||||| || ||||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttcc 26802300  T
Q  111 tcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctc 210  Q
    || |||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  26802301 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 26802400  T
Q  211 ttactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  26802401 ttattgacaagggaatccataccttcattgatgacaatgatctt 26802444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 27698906 - 27698679
Alignment:
Q  26 aaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattt 125  Q
    |||| ||| ||||||||||||||||||| || ||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||| ||| ||||||||    
T  27698906 aaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcattt 27698808  T
Q  126 tcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaa 225  Q
    ||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  27698807 tcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaa 27698708  T
Q  226 tccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||||||||||||||    
T  27698707 tccataccttcattgatgacaatgatctt 27698679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 28792184 - 28792401
Alignment:
Q  37 attcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacatt 136  Q
    |||||||||||| |||| || |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||  |||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggatt 28792283  T
Q  137 cacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttc 236  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||    
T  28792284 cacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttc 28792383  T
Q  237 attgatgacaatgatctt 254  Q
    ||||||||||||||||||    
T  28792384 attgatgacaatgatctt 28792401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 27338482 - 27338250
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||       || ||| ||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  27338482 cacagaccacaaaaacttactcattcatattct-------caaacttttttttcatcttatttctctcaattctcatggctatgcaatcactttcctctt 27338390  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||| |||||| |   ||||  ||||| ||||||||||||||||||| |||||||||||   |||||||||| ||||||||||||||||||||||     
T  27338389 cctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttat 27338290  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||| ||||||    
T  27338289 tgacaagggaatcaaaaccttcattgatgacaacgatctt 27338250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 27399222 - 27398990
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||       || ||| ||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  27399222 cacagaccacaaaaacttactcattcatattct-------caaacttttttttcatcttatttctctcaattctcatggctatgcaatcactttcctctt 27399130  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||| |||||| |   ||||  ||||| ||||||||||||||||||| |||||||||||   |||||||||| ||||||||||||||||||||||     
T  27399129 cctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttat 27399030  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||| ||||||    
T  27399029 tgacaagggaatcaaaaccttcattgatgacaacgatctt 27398990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 31284078 - 31284280
Alignment:
Q  42 tattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcactt 141  Q
    |||||||||||| || | ||||| ||||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||  |||||  |    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaat 31284177  T
Q  142 accaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattga 241  Q
    ||||||| ||||| ||||| ||||| | |||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31284178 accaagtattccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattga 31284277  T
Q  242 tga 244  Q
    |||    
T  31284278 tga 31284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 26622805 - 26622968
Alignment:
Q  81 tcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggc 180  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||  |||||  |||||||||||||| ||||| || |||| ||||||||||     
T  26622805 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26622904  T
Q  181 acggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26622905 acggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 26728783 - 26728946
Alignment:
Q  81 tcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggc 180  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||  |||||  |||||||||||||| ||||| || |||| ||||||||||     
T  26728783 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26728882  T
Q  181 acggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26728883 acggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatga 26728946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 254
Target Start/End: Complemental strand, 27593375 - 27593205
Alignment:
Q  84 attctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacg 183  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||   | ||  |||||||| ||||||||||| || || | |||||||||| |||    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 27593276  T
Q  184 gttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||| || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  27593275 gtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtctt 27593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 27531503 - 27531382
Alignment:
Q  133 cattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccatac 232  Q
    |||||||||||||||||||||||||||||||||||   |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  27531503 cattcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatac 27531404  T
Q  233 cttcattgatgacaatgatctt 254  Q
    ||||||||||||||||||||||    
T  27531403 cttcattgatgacaatgatctt 27531382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 27678717 - 27678936
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||||||||||||||||| | ||||||||||||       || |||||||||||||| ||||||| | || |||||||||||||||||||||||||||||    
T  27678717 cacagaccacaaaaacttct-cattcatattct-------caaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttcctctt 27678808  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    || ||||| ||||||||   | ||  |||||||| ||||||||||| || || | |||||||||| ||||||| || || ||||||||||||||||||||    
T  27678809 ccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttac 27678908  T
Q  215 tgacaagggaatccataccttcattgat 242  Q
    ||||||||||||| | ||||||||||||    
T  27678909 tgacaagggaatcaacaccttcattgat 27678936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 27428020 - 27427792
Alignment:
Q  20 accacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctct 119  Q
    ||||||||||| |  ||||||||||||||||||| || |||||| |  ||||  |||||| |||||||||||||| ||||||| ||||| || |||||||    
T  27428020 accacaaaaacatcctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctct 27427923  T
Q  120 tcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgaca 219  Q
    |||||||||||| |||||| |||| | |||||||||| || || |||||  ||||||||| ||||||| || ||||||||||  |||||||||| |||||    
T  27427922 tcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgaca 27427823  T
Q  220 agggaatccataccttcattgatgacaatga 250  Q
    ||||||| | |||||||  ||||||| ||||    
T  27427822 agggaattcgtaccttccatgatgacgatga 27427792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 26884023 - 26884165
Alignment:
Q  112 cttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctct 211  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| || || | |||||||||| | ||||| ||||| |||||||||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctct 26884122  T
Q  212 tactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||| ||||||||||||| |||||||||||||| ||| |||||    
T  26884123 tactaacaagggaatccacaccttcattgatgataatcatctt 26884165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 27706818 - 27706600
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||||||||||||||||| | ||||||||||||       || |||||||||||||| ||||||| | || ||||||||||||||||||||||| |||||    
T  27706818 cacagaccacaaaaacttct-cattcatattct-------caaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctttctctt 27706727  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    || ||||| ||||||||   | ||  |||||||| ||||||||||| || ||   |||||||||| ||||||| || |||||||||||||||||| ||      
T  27706726 ccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggtttcacaggcaatctctacaaggcttttga 27706627  T
Q  215 tgacaagggaatccataccttcattga 241  Q
    ||||||||||||||| |||||||||||    
T  27706626 tgacaagggaatccacaccttcattga 27706600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 26823629 - 26823832
Alignment:
Q  35 tcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctataca 134  Q
    ||||||||||||||||||| || ||||||| ||| |||||||||| |||||||||||||||||||| |||       ||||||||||| |||| |||       
T  26823629 tcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgcagtca------acttcctcttcagtttcatatgat 26823722  T
Q  135 ttcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccatacct 234  Q
    ||||  ||||||||||| ||||||||||| |||  |||||||||| | |  ||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  26823723 ttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctcttacagacaagggaatccacacct 26823822  T
Q  235 tcattgatga 244  Q
    |  |||||||    
T  26823823 tttttgatga 26823832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 26861446 - 26861608
Alignment:
Q  82 caattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggca 181  Q
    ||||||| ||||||||||||||||||| ||||||||||||  ||||||||  |||||  ||||| || ||||||||||| || || | |||||||||| |    
T  26861446 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggta 26861545  T
Q  182 cggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
     |||||||| || |||||||||||||||||||||||||||||||| || |||||||| |||||    
T  26861546 tggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatga 26861608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 27677969 - 27677812
Alignment:
Q  84 attctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacg 183  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||   | ||  |||||||| ||||||| ||| || || | |||||||||| |||    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacg 27677870  T
Q  184 gttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattga 241  Q
    |||| || |||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  27677869 gtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattga 27677812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 26646299 - 26646471
Alignment:
Q  78 ctttcaattctcatggctatgcaatcaccttcc------tcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattg 171  Q
    |||||||||||||||||||||||||| ||||||      |||||||||| | |||||||   |||||| ||||| || |||||||  || ||||||| ||    
T  26646299 ctttcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtg 26646398  T
Q  172 acactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    |||||||  |||||||||||||  ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  26646399 acactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatga 26646471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 26752267 - 26752439
Alignment:
Q  78 ctttcaattctcatggctatgcaatcaccttcc------tcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattg 171  Q
    |||||||||||||||||||||||||| ||||||      |||||||||| | |||||||   |||||| ||||| || |||||||  || ||||||| ||    
T  26752267 ctttcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtg 26752366  T
Q  172 acactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    |||||||  |||||||||||||  ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  26752367 acactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatga 26752439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 25538338 - 25538431
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25538338 acagaccacacaaa-ttaatcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25538431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 26055724 - 26055818
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcct 111  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  26055724 acagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcct 26055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 25481540 - 25481633
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25481540 acagaccacacaaa-ttactcattcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26048643 - 26048736
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26048643 acagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26069812 - 26069905
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26069812 acagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26069905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26075694 - 26075787
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26075694 acagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 26142663 - 26142756
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    |||||||||| ||| ||| ||||||||||||| ||||  || | ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26142663 acagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcc 26142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 25481636 - 25481744
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||||  |||||||||||| | ||| |||||||||||     
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  25481736 aatgatctt 25481744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 25579613 - 25579721
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| || |||| |||||||||  ||  |||||| || |||||||| |||||||||  |||||||||||| | ||||||| |||||||     
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  25579713 aatgatctt 25579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 26048739 - 26048847
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| | ||||||||||||   ||| |||||||||||     
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  26048839 aatgatctt 26048847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 26055820 - 26055928
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||||  ||||||||||||  |||| |||||||||||     
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  26055920 aatgatctt 26055928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 26069908 - 26070016
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| | ||||||||||||   ||| |||||||||||     
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  26070008 aatgatctt 26070016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 26075790 - 26075898
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||||  ||||||||||||  |||| |||||||||||     
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  26075890 aatgatctt 26075898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 26142759 - 26142867
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| |||||||||  |||||||||||| | ||| |||||||||||     
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  26142859 aatgatctt 26142867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25579566 - 25579610
Alignment:
Q  66 ttcatccaatttctttcaattctcatggctatgcaatcaccttcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  25579566 ttcatccaaattctttcaattctcatggctatgcaatcaccttcc 25579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 28098725 - 28098596
Alignment:
Q  86 tctcatggctatgc---aatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcac 182  Q
    ||||||||||||||   ||||| ||||||||| ||||||||| || |||  |||||| ||  | ||||| || | |||||||||||  ||||||||| |     
T  28098725 tctcatggctatgctccaatcatcttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtat 28098626  T
Q  183 ggttttactggcaatctctacaaggctctt 212  Q
    ||||||||||| ||||||||||| ||||||    
T  28098625 ggttttactggaaatctctacaaagctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 26342290 - 26342171
Alignment:
Q  86 tctcatggctatgc---aatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcac 182  Q
    ||||||||||||||   ||||| | ||||||| ||||||||| || |||  |||||| ||  | |||||||||| |||||||||||||| ||||||  |     
T  26342290 tctcatggctatgctccaatcatcgtcctctttctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctat 26342191  T
Q  183 ggttttactggcaatctcta 202  Q
    ||||||||||||||| ||||    
T  26342190 ggttttactggcaatatcta 26342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 25538434 - 25538542
Alignment:
Q  146 agtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| |||||||||  ||||||||||||   ||| ||||| |||||     
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgat 25538533  T
Q  246 aatgatctt 254  Q
    |||||||||    
T  25538534 aatgatctt 25538542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 26848592 - 26848662
Alignment:
Q  184 gttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||| ||||| |||||||| || |||||| ||||||| |||||||  ||||||||||||||||| ||||||    
T  26848592 gtttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaaggatctt 26848662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 27665358 - 27665309
Alignment:
Q  198 ctctacaaggctcttactgacaagggaatccataccttcattgatgacaa 247  Q
    ||||| ||||||||| ||||||| |||||||| |||||||||||||||||    
T  27665358 ctctataaggctctttctgacaaaggaatccacaccttcattgatgacaa 27665309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 28325343 - 28325476
Alignment:
Q  114 tcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctctta 213  Q
    |||||||| |||||||||  |||||| ||  | |||||||| |||||||| || | |||||||||  | ||||||||||| ||||||||||| | ||||     
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 28325442  T
Q  214 ctgacaagggaatccataccttcattgatgacaa 247  Q
     |   ||| |||| | ||||||||||||||||||    
T  28325443 gtaggaagagaattcgtaccttcattgatgacaa 28325476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 27214336 - 27214412
Alignment:
Q  171 gacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaa 247  Q
    |||||||| |||||||| || || |||||||| || ||||||  |||||| |||||||  |||||||||||||||||    
T  27214336 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaa 27214412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 27234892 - 27234816
Alignment:
Q  171 gacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaa 247  Q
    |||||||| |||||||| || || |||||||| || ||||||  |||||| |||||||  |||||||||||||||||    
T  27234892 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaa 27234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 29825958 - 29826022
Alignment:
Q  183 ggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaa 247  Q
    |||||||| |||||||||||||| ||||| |||||||||  ||| |  |||||||||||||||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaa 29826022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 28234459 - 28234558
Alignment:
Q  147 gtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 246  Q
    |||||||| |||||||| || | |||||||||  | |||||||| |  |||||||| |  ||||||  | ||||||||||||| ||||||||||||||||    
T  28234459 gtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 28234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 26018836 - 26018770
Alignment:
Q  90 atggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctca 156  Q
    |||||||| ||||||||||| ||| |||| || |||||||||  | |||| ||||||||||||||||    
T  26018836 atggctattcaatcaccttcgtctacctcatccttttcctatggactcacataccaagtgttcctca 26018770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 26139540 - 26139474
Alignment:
Q  90 atggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctca 156  Q
    |||| ||| ||||||||||||||| |||| || |||||||||  | |||| ||||||||||||||||    
T  26139540 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 26139474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 25071589 - 25071654
Alignment:
Q  182 cggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaa 247  Q
    ||||||||| || ||||| || || |||||| ||||||| |||||||| ||||| |||||||||||    
T  25071589 cggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaa 25071654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 28226845 - 28226902
Alignment:
Q  147 gtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctaca 204  Q
    |||||||| |||||||| || |||||||||||  | ||||||||||| ||||||||||    
T  28226845 gtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 28226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 28242702 - 28242798
Alignment:
Q  150 ttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 246  Q
    ||||| |||||||| || | |||||||||  | ||||||||||| ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||    
T  28242702 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 28242798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 3844 - 3607
Alignment:
Q  16 acagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttc 115  Q
    |||||||||||||| |||  |||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||| |||||||||||||| ||    
T  3844 acagaccacaaaaatttac-cattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttcctcatc 3746  T
Q  116 ctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttact 215  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  3745 ctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttact 3646  T
Q  216 gacaagggaatccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3645 gacaagggaatccataccttcattgatgacaatgatctt 3607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 14767 - 14540
Alignment:
Q  26 aaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattt 125  Q
    |||| ||| ||||||||||||||||||| || ||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||| ||| ||||||||    
T  14767 aaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcattt 14669  T
Q  126 tcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaa 225  Q
    ||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  14668 tcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaa 14569  T
Q  226 tccataccttcattgatgacaatgatctt 254  Q
    |||||||||||||||||||||||||||||    
T  14568 tccataccttcattgatgacaatgatctt 14540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 8225 - 8061
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||||| |||||||| | | ||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttcctcat 8126  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcgg 179  Q
    |||||||||| ||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  8125 cctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 334 - 102
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||       || |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  334 cacagaccacaaaaacttactcattcatattct-------caaactcttttttcatctaatttctctcaattctcatggctatgcaatcacctccctctt 242  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  241 cctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttac 142  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  141 tgacaagggaatcaaaaccttcattgatgacaatgatctt 102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 7295 - 7527
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    ||||||||||||||||||| |||||||||||||       || |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  7295 cacagaccacaaaaacttactcattcatattct-------caaactcttttttcatctaatttctctcaattctcatggctatgcaatcacctccctctt 7387  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  7388 cctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttac 7487  T
Q  215 tgacaagggaatccataccttcattgatgacaatgatctt 254  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  7488 tgacaagggaatcaaaaccttcattgatgacaatgatctt 7527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 18699807 - 18699581
Alignment:
Q  17 cagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcc 116  Q
    |||||||||||||||||  |  ||||||||||||||| || |||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||    
T  18699807 cagaccacaaaaacttaacc--tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttcctcatcc 18699710  T
Q  117 tcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactg 216  Q
    |||||||||||||||  |||||||||||||||||||||||| || ||||||| |||||||||  |||||||||||||| |||||||||| ||||||||||    
T  18699709 tcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactg 18699610  T
Q  217 acaagggaatccataccttcattgatgac 245  Q
    ||||||||||||| |||||||||||||||    
T  18699609 acaagggaatccacaccttcattgatgac 18699581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 18655886 - 18655658
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||| ||||||||||||||  |  ||||||||||||||| || |||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||| |    
T  18655886 cacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttcctcat 18655789  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||||||||||  |||||||||||||||||||||||| || ||||||| |||||||||  |||||||||||||  |||||||||| ||||||||    
T  18655788 cctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttac 18655689  T
Q  215 tgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| |||||||||||||||    
T  18655688 tgacaagggaatccacaccttcattgatgac 18655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 18731913 - 18731685
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||| ||||||||||||||  |  ||||||||||||||| || |||||||||||||||| ||||| || ||| ||||||||||||||||||||||||| |    
T  18731913 cacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttcctcat 18731816  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
    |||||||||||||||||  |||||||||||||||||||||||| || ||||||| |||||||||  |||||||||||||| |||||||||  ||||||||    
T  18731815 cctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctcttac 18731716  T
Q  215 tgacaagggaatccataccttcattgatgac 245  Q
    ||||||||||||||| |||||||||||||||    
T  18731715 tgacaagggaatccacaccttcattgatgac 18731685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 18679976 - 18679748
Alignment:
Q  15 cacagaccacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctctt 114  Q
    |||| ||||||||||||||  |  ||||||||||||||| || |||||||||||||||| ||||| || ||| ||||||||||||||||||||||||| |    
T  18679976 cacataccacaaaaacttaaac--tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttcctcat 18679879  T
Q  115 cctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttac 214  Q
     ||||||||||||||||  |||||||||||||||||||||||| || ||||||| |||||||||  |||||||||||||  |||||||||||||||||||    
T  18679878 tctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttac 18679779  T
Q  215 tgacaagggaatccataccttcattgatgac 245  Q
    |||||| |||||||| |||||||||||||||    
T  18679778 tgacaaaggaatccacaccttcattgatgac 18679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 18724430 - 18724266
Alignment:
Q  81 tcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggc 180  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| || ||||||| |||||||||      
T  18724430 tcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgta 18724331  T
Q  181 acggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 245  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18724330 acggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgac 18724266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 17989454 - 17989226
Alignment:
Q  20 accacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctct 119  Q
    ||||||||||| |  ||||||||||||||||||| || |||||| |  ||||  |||||| |||||||||||||| ||||||| ||||| || |||||||    
T  17989454 accacaaaaacatcctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctct 17989357  T
Q  120 tcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgaca 219  Q
    |||||||||||| |||||| |||| | |||||||||| || || |||||  ||||||||| ||||||| || ||||||||||  |||||||||| |||||    
T  17989356 tcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgaca 17989257  T
Q  220 agggaatccataccttcattgatgacaatga 250  Q
    ||||||| | |||||||  ||||||| ||||    
T  17989256 agggaattcgtaccttccatgatgacgatga 17989226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 18073535 - 18073763
Alignment:
Q  20 accacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctct 119  Q
    ||||||||||| |  ||||||||||||||||||| || |||||| |  ||||  |||||| |||||||||||||| ||||||| ||||| || |||||||    
T  18073535 accacaaaaacatcctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctct 18073632  T
Q  120 tcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgaca 219  Q
    |||||||||||| |||||| |||| | |||||||||| || || |||||  ||||||||| ||||||| || ||||||||||  |||||||||| |||||    
T  18073633 tcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgaca 18073732  T
Q  220 agggaatccataccttcattgatgacaatga 250  Q
    ||||||| | |||||||  ||||||| ||||    
T  18073733 agggaattcgtaccttccatgatgacgatga 18073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 5091237 - 5091147
Alignment:
Q  156 agttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 246  Q
    |||||||| ||||  ||||||||  ||||||||||||| ||||||||  | |||||   || ||||||||| || ||||||||||||||||    
T  5091237 agttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgaca 5091147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 28164735 - 28164544
Alignment:
Q  53 cccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttc 152  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||| ||||||||  |||||| ||||||||||||    
T  28164735 cccaaactcttttctcatccaatttctgtcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttc 28164636  T
Q  153 ctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    |||||||||||||||| |||||||||  ||||||| |||||| ||||||| ||||| |||   ||||||||||| || || |||||||||||    
T  28164635 ctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatga 28164544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 28128042 - 28127862
Alignment:
Q  58 actcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcag 157  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||      | ||||||||  |||||| |||||||||||||||||    
T  28128042 actcttttctcatccaatttttgtcaattctcatggctatgcaatcacattcctcttc------aatttcctatggattcacataccaagtgttcctcag 28127949  T
Q  158 ttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
     || ||||||| |||||||||  ||||||| |||||| ||||||||||||| |||  ||||||||||||||| || |||||||||||    
T  28127948 cttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatga 28127862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 268711 - 268539
Alignment:
Q  73 aatttctt-tcaattctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattg 171  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||| | || |||  |||  | ||||| || |||||||  || || |||  ||    
T  268711 aatttcttctcagttctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtg 268612  T
Q  172 acactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    |||||||  | ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  268611 acactcgtgagggttttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatga 268539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 59343 - 59571
Alignment:
Q  20 accacaaaaacttattcattcatattctgcattcccagactcttttttcatccaatttctttcaattctcatggctatgcaatcaccttcctcttcctct 119  Q
    ||||||||||| |  ||||||||||||||||||| || |||||| |  ||||  |||||| |||||||||||||| ||||||| ||||| || |||||||    
T  59343 accacaaaaacatcctcattcatattctgcattctcaaactcttct--catcttatttctctcaattctcatggccatgcaattacctttctattcctct 59440  T
Q  120 tcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgaca 219  Q
    |||||||||||| |||||| |||| | |||||||||| || || |||||  ||||||||| ||||||| || ||||||||||  |||||||||| |||||    
T  59441 tcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgaca 59540  T
Q  220 agggaatccataccttcattgatgacaatga 250  Q
    ||||||| | |||||||  ||||||| ||||    
T  59541 agggaattcgtaccttccatgatgacgatga 59571  T

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Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 86 - 244
Target Start/End: Complemental strand, 29274123 - 29273965
Alignment:
Q  86 tctcatggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggt 185  Q
    ||||||||||||||||||||||||||||||||||||| | || |||  |||||||||||| || |||||||  ||||| |||  |||||||||  |||||    
T  29274123 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggt 29274024  T
Q  186 tttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatga 244  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  29274023 tttattggccatctctacaagactcttactgacaagggaatccacaccttcattgatga 29273965  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 31903733 - 31903840
Alignment:
Q  134 attcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccatacc 233  Q
    |||||| ||| | ||||||||||| ||||| ||| | ||||||||  | ||||||||||| ||||||||||| ||||||  ||| ||||||||||| |||    
T  31903733 attcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatccacacc 31903832  T
Q  234 ttcattga 241  Q
    || |||||    
T  31903833 tttattga 31903840  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 58607 - 58475
Alignment:
Q  114 tcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctctta 213  Q
    |||||||| || ||||||  |||||| || || |||||||| || ||||| ||   |||||||||  | ||||||||||| ||||||||||  ||||||     
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctcttt 58508  T
Q  214 ctgacaagggaatccataccttcattgatgaca 246  Q
     ||||||||||||||  |||||||| |||||||    
T  58507 gtgacaagggaatccgaaccttcatggatgaca 58475  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 116658 - 116791
Alignment:
Q  114 tcctcttcattttcctatacattcacttaccaagtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctctta 213  Q
    |||||||| |||||||||  |||||| ||  | |||||||| |||||||| || | |||||||||  | ||||||||||| ||||||||||| | ||||     
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 116757  T
Q  214 ctgacaagggaatccataccttcattgatgacaa 247  Q
     |   ||| |||| | ||||||||||||||||||    
T  116758 gtaggaagagaattcgtaccttcattgatgacaa 116791  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 34620 - 34719
Alignment:
Q  147 gtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 246  Q
    |||||||| |||||||| || | |||||||||  | |||||||| |  |||||||| |  ||||||  | ||||||||||||| ||||||||||||||||    
T  34620 gtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacaccttcattgatgaca 34719  T

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Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 27343 - 27400
Alignment:
Q  147 gtgttcctcagttttaggggcattgacactcggcacggttttactggcaatctctaca 204  Q
    |||||||| |||||||| || |||||||||||  | ||||||||||| ||||||||||    
T  27343 gtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 27400  T

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Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 42864 - 42960
Alignment:
Q  150 ttcctcagttttaggggcattgacactcggcacggttttactggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgaca 246  Q
    ||||| |||||||| || | |||||||||  | ||||||||||| ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||    
T  42864 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgaca 42960  T

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Target: scaffold0713 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 5916 - 5982
Alignment:
Q  90 atggctatgcaatcaccttcctcttcctcttcattttcctatacattcacttaccaagtgttcctca 156  Q
    |||| ||| ||||||||||||||| |||| || |||||||||  | |||| ||||||||||||||||    
T  5916 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 5982  T

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