View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3532_low_9 (Length: 250)
Name: NF3532_low_9
Description: NF3532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3532_low_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 14068681 - 14068444
Alignment:
| Q |
12 |
atgaataatagaattttcgacaacaaagaagtccatgtgccctaattactagataaaattaagctacaatctttttagtggttgaaggtnnnnnnntcgt |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | || |
|
|
| T |
14068681 |
atgaataatagaattttcaacaacaaagaagtccatgtgccctaattactagataaaattaagctataatctttttggtggttgaaggtaaaaaatt-gt |
14068583 |
T |
|
| Q |
112 |
aattttacttttgattatcatgttttctggctttattcttttaatgaacatgggttacactatgtagtttttcttatattcttgaaatattctttttaat |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14068582 |
aattttacttttgattatcatgtttgctggctttattcttttaatgtacatgggttacactatgtagtttttcttatattcttgaaatattctttttaat |
14068483 |
T |
|
| Q |
212 |
aatccaactannnnnnnnataaggagtaactcttaattt |
250 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
14068482 |
aatccaactattttttttataaggagtaactcttaattt |
14068444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 881933 - 882005
Alignment:
| Q |
15 |
aataatagaattttcgacaacaaagaagtccatgtgccctaattactagataaaattaagctacaatcttttt |
87 |
Q |
| |
|
||||||| ||||||||||||||||||| || | || | |||| || |||||||||||||||| |||||||| |
|
|
| T |
881933 |
aataataaaattttcgacaacaaagaattctagttgtctcaattgcttgataaaattaagctactatcttttt |
882005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 9145623 - 9145662
Alignment:
| Q |
60 |
ctagataaaattaagctacaatctttttagtggttgaagg |
99 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9145623 |
ctagataaaattaagctccaatctttttggtggttgaagg |
9145662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University