View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3533_high_1 (Length: 238)
Name: NF3533_high_1
Description: NF3533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3533_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 18260545 - 18260731
Alignment:
| Q |
36 |
agtcaaaagtctaagaagagtagttcatacatacgtattgcaaacagagctgaacaccaacgatgcctgcagggtgtgtaaatgcatgcataatctcccc |
135 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18260545 |
agtcacaagtctaagaagagtagttcatacatacgtattgcaaacagagctgaacaccaacgatgcctgcagggtgtgtaaatgcatgcataatctcccc |
18260644 |
T |
|
| Q |
136 |
ttccgcacaaaggatatccaaaagaaactatgtatagaccatgagtggaaagcattaaccaacaaacaactacaacacatgcaatat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18260645 |
ttccgcacaaaggatatccaaaagaaactatgtatagaccatgagtgaaaagcattaaccaacaaacaactacaacacatgcaatat |
18260731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18260491 - 18260532
Alignment:
| Q |
1 |
tttatgatacagtaaaatcaggacagtcttagatgagtcaaa |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18260491 |
tttatgatacagtaaaatcaggacagtcttagatgagtcaaa |
18260532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University