View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3534_high_1 (Length: 618)

Name: NF3534_high_1
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3534_high_1
NF3534_high_1
[»] chr4 (12 HSPs)
chr4 (18-357)||(47863450-47863790)
chr4 (162-357)||(56083445-56083630)
chr4 (257-351)||(5169489-5169582)
chr4 (162-353)||(12862495-12862676)
chr4 (257-353)||(51569901-51569996)
chr4 (162-233)||(6658647-6658718)
chr4 (138-178)||(6210672-6210712)
chr4 (138-172)||(24685091-24685125)
chr4 (192-233)||(16312768-16312809)
chr4 (138-178)||(24126265-24126305)
chr4 (138-185)||(47376598-47376646)
chr4 (138-178)||(51568875-51568915)
[»] chr3 (16 HSPs)
chr3 (139-357)||(11151371-11151579)
chr3 (257-351)||(39606421-39606514)
chr3 (257-351)||(54673431-54673524)
chr3 (31-83)||(19470728-19470780)
chr3 (252-351)||(48538031-48538130)
chr3 (257-351)||(37086523-37086609)
chr3 (264-353)||(52092674-52092763)
chr3 (291-353)||(34825787-34825849)
chr3 (291-353)||(46652719-46652781)
chr3 (138-178)||(52090741-52090781)
chr3 (84-114)||(48537852-48537882)
chr3 (85-114)||(14997027-14997056)
chr3 (85-114)||(39605584-39605613)
chr3 (192-233)||(46652821-46652862)
chr3 (195-223)||(34825709-34825737)
chr3 (193-233)||(36437336-36437376)
[»] chr1 (15 HSPs)
chr1 (141-357)||(24304087-24304294)
chr1 (257-351)||(13970780-13970874)
chr1 (287-352)||(51676128-51676193)
chr1 (257-353)||(35712624-35712719)
chr1 (162-233)||(51676228-51676299)
chr1 (138-223)||(24302999-24303083)
chr1 (138-178)||(21749235-21749275)
chr1 (138-223)||(9010960-9011044)
chr1 (138-223)||(17242006-17242090)
chr1 (138-178)||(49384446-49384486)
chr1 (138-185)||(17240784-17240831)
chr1 (195-230)||(30232644-30232679)
chr1 (162-233)||(35712544-35712615)
chr1 (257-343)||(41669692-41669779)
chr1 (138-178)||(9008826-9008866)
[»] chr8 (9 HSPs)
chr8 (138-356)||(40462337-40462545)
chr8 (287-357)||(9755878-9755948)
chr8 (138-178)||(14101036-14101076)
chr8 (162-233)||(9755775-9755846)
chr8 (162-233)||(26521893-26521964)
chr8 (292-351)||(38974597-38974656)
chr8 (292-351)||(39005695-39005754)
chr8 (291-353)||(26521791-26521853)
chr8 (139-207)||(40463523-40463590)
[»] scaffold0262 (1 HSPs)
scaffold0262 (138-357)||(2825-3032)
[»] chr6 (5 HSPs)
chr6 (261-351)||(21511668-21511758)
chr6 (262-332)||(12605064-12605133)
chr6 (262-340)||(25482329-25482406)
chr6 (138-178)||(9307089-9307129)
chr6 (139-223)||(7538329-7538413)
[»] chr7 (5 HSPs)
chr7 (262-353)||(7849044-7849133)
chr7 (258-354)||(23526548-23526644)
chr7 (258-353)||(47578392-47578486)
chr7 (138-223)||(5737244-5737328)
chr7 (138-185)||(5769246-5769293)
[»] chr5 (2 HSPs)
chr5 (162-233)||(27491167-27491238)
chr5 (287-353)||(27491059-27491124)
[»] chr2 (2 HSPs)
chr2 (192-223)||(29043524-29043555)
chr2 (291-353)||(29043412-29043474)
[»] scaffold0408 (1 HSPs)
scaffold0408 (84-114)||(10087-10117)
[»] scaffold0471 (1 HSPs)
scaffold0471 (138-178)||(10853-10893)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 47863790 - 47863450
Alignment:
Q  18 aaaataagtatgaaatgttaatttggtacagtgttgctgttgaagcacttttgataaattaatgtggggttaataggcttttacc--cctgccatttggt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  47863790 aaaataagtatgaaatgttaatttggtacagtgttgctgttgaagcacttttgataaattaatgcggggttaataggcttttacctccctgccatttggt 47863691  T
Q  116 ttaccccctacggnnnnnnnnncttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgat 215  Q
    |||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863690 ttaccccctacggaaaaaaaaacttggagattccccctcgtcattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgat 47863591  T
Q  216 gtggcacgttaactgtgtgatgatgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgt 315  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  47863590 gtggcacgctaactgtgtgatgatgtggcacgctgactgatgtggcactgacacgtcataa-ttttaaatcttttatttttaaaagtatgttaaaaatgt 47863492  T
Q  316 gaaatacccaaaataccccttatgataagttaaaaaaatcaa 357  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47863491 gaaatacccaaaataccccttatgataagttaaaaaaatcaa 47863450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 162 - 357
Target Start/End: Original strand, 56083445 - 56083630
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatgtggcacgctgactgatgtggc 261  Q
    ||||||||||||||||||||| || | || ||||||||||||||||||| |||||||||||| | |||||||  ||||| |          ||| |||||    
T  56083445 gaagattctttgattttcaactctgatgccatctgactggattaatgagttgatgtggcacgctgactgtgtagtgatgag----------tgaagtggc 56083534  T
Q  262 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaatcaa 357  Q
    | |||||| ||||| ||| || || |||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||    
T  56083535 attgacatatcatattttatatattttttttttttaaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaattaaaaaattcaa 56083630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 257 - 351
Target Start/End: Original strand, 5169489 - 5169582
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    |||||||||||| |||||||||||||  | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  5169489 gtggcactgacacgtcataatttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 5169582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 353
Target Start/End: Complemental strand, 12862676 - 12862495
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatgtggcacgctgactgatgtggc 261  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||| | |||||||  |||||         || |||  ||||    
T  12862676 gaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgtagtgatg---------ga-tgaaatggc 12862587  T
Q  262 actgacatgtcataatttttaaatcttttatttttaaaagtatgtt-aaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    ||||||| ||||||||||||  || ||||||||||||||  ||||| ||||| |||||||||| |||| |||| | ||||||| |||||||||    
T  12862586 actgacacgtcataattttt-tattttttatttttaaaataatgttaaaaaaagtgaaatacctaaaacacccttaatgataaattaaaaaaa 12862495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 51569996 - 51569901
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||| |||||   || |||||||||||| ||||||| | ||||||| |||||||||    
T  51569996 gtggcactgacacgtcataatttttaaat-tttaatttttaaaagaatgtttggaaagtgaaatacccagaatacccttaatgataaattaaaaaaa 51569901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 6658718 - 6658647
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||||||||||||||  | |  |||||||||||||||||||||||||||||||| | |||||||    
T  6658718 gaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 6658647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 6210672 - 6210712
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  6210672 cttggagattcccccttgccattagaagattctttgatttt 6210712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 24685091 - 24685125
Alignment:
Q  138 cttggagattccccctcgccattagaagattcttt 172  Q
    ||||||||||||||||||||||| |||||||||||    
T  24685091 cttggagattccccctcgccatttgaagattcttt 24685125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 16312768 - 16312809
Alignment:
Q  192 atctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    ||||||||||||||||||| |||||||||||| | |||||||    
T  16312768 atctgactggattaatgagatgatgtggcacgctgactgtgt 16312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 24126265 - 24126305
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  24126265 cttggaaattccccctcgccatttgaagattctttggtttt 24126305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 47376598 - 47376646
Alignment:
Q  138 cttggagattccccctc-gccattagaagattctttgattttcaaccct 185  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||||    
T  47376598 cttggagattccccccctgccattagaagattctttggttttgaaccct 47376646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 51568875 - 51568915
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    ||||||||| |||||||| ||||||||||||||||| ||||    
T  51568875 cttggagatcccccctcgacattagaagattctttggtttt 51568915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 5e-73; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 139 - 357
Target Start/End: Complemental strand, 11151579 - 11151371
Alignment:
Q  139 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatga 238  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11151579 ttggagattcccccttgccatgagaagattctttgattttcaaccctcagacaatctgactggattcatgagctgatgtggcacgttaactgtgtgatga 11151480  T
Q  239 tgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttat 338  Q
              ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  11151479 ----------tgagtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccataat 11151390  T
Q  339 gataagttaaaaaaatcaa 357  Q
    ||||| |||||||||||||    
T  11151389 gataaattaaaaaaatcaa 11151371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 39606514 - 39606421
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    |||||||||||| |||||| ||||||  | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  39606514 gtggcactgacacgtcatattttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 39606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 54673524 - 54673431
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    ||||||||||||  ||||||||||| | | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  54673524 gtggcactgacacatcataattttttatt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 54673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 19470728 - 19470780
Alignment:
Q  31 aatgttaatttggtacagtgttgctgttgaagcacttttgataaattaatgtg 83  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19470728 aatgttaatttggtacaatgttgctgttgaagcacttttgataaattaatgtg 19470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 48538031 - 48538130
Alignment:
Q  252 ctgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    |||| |||||||||||| |||| | |||||  |  |||||||||||||| |||||| ||||||||||||||| || |||||||| ||||||| |||||||    
T  48538031 ctgaagtggcactgacacgtcaaattttttttaatttttatttttaaaattatgttgaaaatgtgaaatacctaatatacccctaatgataaattaaaaa 48538130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 37086609 - 37086523
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    |||||||||||| ||||||||||||||        |||||||||||||||| |||| |||||||||| |||||||||||  |||||| |||||||    
T  37086609 gtggcactgacacgtcataatttttaa--------tttttaaaagtatgtttaaaacgtgaaatacctaaaatacccctagtgataaattaaaaa 37086523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 52092763 - 52092674
Alignment:
Q  264 tgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    ||||| ||||||||||||  || ||||||||||||||| |||||   || |||||||||| ||||||||| | ||||||| |||||||||    
T  52092763 tgacacgtcataatttttttattttttatttttaaaagaatgtttggaaagtgaaatacctaaaatacccttaatgataaattaaaaaaa 52092674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 34825787 - 34825849
Alignment:
Q  291 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  34825787 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 34825849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 46652781 - 46652719
Alignment:
Q  291 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  46652781 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 46652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 52090741 - 52090781
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  52090741 cttggagatcccccctcgacattagaagattctttgatttt 52090781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 48537852 - 48537882
Alignment:
Q  84 gggttaataggcttttacccctgccatttgg 114  Q
    |||||||||||||||||||||||||||||||    
T  48537852 gggttaataggcttttacccctgccatttgg 48537882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 14997027 - 14997056
Alignment:
Q  85 ggttaataggcttttacccctgccatttgg 114  Q
    ||||||||||||||||||||||||||||||    
T  14997027 ggttaataggcttttacccctgccatttgg 14997056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 39605584 - 39605613
Alignment:
Q  85 ggttaataggcttttacccctgccatttgg 114  Q
    ||||||||||||||||||||||||||||||    
T  39605584 ggttaataggcttttacccctgccatttgg 39605613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 46652862 - 46652821
Alignment:
Q  192 atctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  46652862 atctgactggattaatgagttgatgtggtacgttgactgtgt 46652821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 34825709 - 34825737
Alignment:
Q  195 tgactggattaatgagctgatgtggcacg 223  Q
    |||||||||||||||||||||||||||||    
T  34825709 tgactggattaatgagctgatgtggcacg 34825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 36437336 - 36437376
Alignment:
Q  193 tctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||||||||| |||||||||||| | |||||||    
T  36437336 tctgactggattaatgagatgatgtggcacgctgactgtgt 36437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 141 - 357
Target Start/End: Complemental strand, 24304294 - 24304087
Alignment:
Q  141 ggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatg 240  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| | ||||||||||||||    
T  24304294 ggagatttcccctcgccattagaagattctttgattttcaaccctcaggcaatctgattggattaatgaattgatgtggcacgctgactgtgtgatgatg 24304195  T
Q  241 tggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta-tg 339  Q
     |          ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  24304194 ag----------tgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctaattg 24304105  T
Q  340 ataagttaaaaaaatcaa 357  Q
    |||| |||||||||||||    
T  24304104 ataaattaaaaaaatcaa 24304087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 13970874 - 13970780
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    ||||||| |||| ||||||||||||  || ||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  13970874 gtggcaccgacacgtcataatttttttattttttattgttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 13970780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 51676193 - 51676128
Alignment:
Q  287 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaa 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  51676193 ttttatttttaaaagtatgttaaaaatgtgaaatacctaaaatacccttaatgataaattaaaaaa 51676128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 35712624 - 35712719
Alignment:
Q  257 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||||| |||||||||||| | | |||||||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  35712624 gtggcactgacacgtcataattttttatt-ttttatttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 35712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 51676299 - 51676228
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||  |||||||||||| | |||||||    
T  51676299 gaagattctttgattttcaaccctgatgccatctgactggattaatgaattgatgtggcacgctgactgtgt 51676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 24302999 - 24303083
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 223  Q
    |||||||||||||||| || |||||||||||||||||||| | ||||||| || |||||| |||||||||| | |||| |||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttac-accctcaagccatctgaatggattaatgtgatgatttggcacg 24303083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 21749275 - 21749235
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  21749275 cttggagattcccccttgccattagaagattctttgatttt 21749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 9011044 - 9010960
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 223  Q
    |||| ||||| ||||| ||||||||||||||||||| ||| || ||| ||  | ||||||||||||||||| | ||||||||||||    
T  9011044 cttgtagatttccccttgccattagaagattctttggtttacacccc-caaaccatctgactggattaatgtgatgatgtggcacg 9010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 17242090 - 17242006
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 223  Q
    |||| ||||||||||| ||||||||||||||||||| ||| | |||| ||  | |||||||| |||||||| | ||||||||||||    
T  17242090 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacg 17242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 49384486 - 49384446
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  49384486 cttggagattccccctcgccatttgaagattctttggtttt 49384446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 17240784 - 17240831
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccct 185  Q
    |||| ||||||||||| ||||||||||||||||||| |||| ||||||    
T  17240784 cttgtagattcccccttgccattagaagattctttggttttgaaccct 17240831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 30232679 - 30232644
Alignment:
Q  195 tgactggattaatgagctgatgtggcacgttaactg 230  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30232679 tgactggattaatgagctgatgtggcatgttaactg 30232644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 35712544 - 35712615
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||| ||| || |||| | |  ||||||||||||||||||||||||||| |||| | |||||||    
T  35712544 gaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtgacacgctgactgtgt 35712615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 41669779 - 41669692
Alignment:
Q  257 gtggcactgacatgtcataatttttaa-atcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataa 343  Q
    |||||||||||| ||||| ||||||   || |||||||||||||| |||||| ||||||  |||||||  |||||||||| |||||||    
T  41669779 gtggcactgacacgtcatgattttttttattttttatttttaaaattatgttgaaaatgcaaaataccttaaatacccctaatgataa 41669692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 9008826 - 9008866
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  9008826 cttgtagattcccccttgccattagaagattctttggtttt 9008866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 138 - 356
Target Start/End: Original strand, 40462337 - 40462545
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatg 237  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||  |||    
T  40462337 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcacgctgactgtgcaatg 40462436  T
Q  238 atgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 337  Q
    |          ||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |    
T  40462437 a----------tgagtgaagtggcactgacacatcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaacccccaaaatacccctaa 40462526  T
Q  338 tgataagttaaaaaaatca 356  Q
    |||||| ||||||||||||    
T  40462527 tgataaattaaaaaaatca 40462545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 9755878 - 9755948
Alignment:
Q  287 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaatcaa 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||    
T  9755878 ttttatttttaaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaattaaaaaattcaa 9755948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 14101076 - 14101036
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  14101076 cttggagattcccccttgccattagaagattctttgatttt 14101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 9755775 - 9755846
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| |||||| ||||| | |||||||    
T  9755775 gaagattatttgattttcaaccctaatgtcatctgactggattaatgagttgatgtagcacgctgactgtgt 9755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 26521964 - 26521893
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||| ||| || |||| | |  |||||||||||||||||||||||||||||||| | |||||||    
T  26521964 gaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 26521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 38974656 - 38974597
Alignment:
Q  292 tttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    ||||| ||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  38974656 ttttttaaattatgttaaaaatgtgaaatatctaaaatacccctaatgataaattaaaaa 38974597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 39005754 - 39005695
Alignment:
Q  292 tttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    ||||| ||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  39005754 ttttttaaattatgttaaaaatgtgaaatatctaaaatacccctaatgataaattaaaaa 39005695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 26521853 - 26521791
Alignment:
Q  291 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  26521853 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 26521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 40463590 - 40463523
Alignment:
Q  139 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaat 207  Q
    |||||||||||||||  |||||||||||||||||||||| | |||| || || |||||| |||||||||    
T  40463590 ttggagattcccccttaccattagaagattctttgatttac-acccccaagccatctgattggattaat 40463523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 138 - 357
Target Start/End: Original strand, 2825 - 3032
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatg 237  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||| ||||    
T  2825 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcatgctgactgtgcgatg 2924  T
Q  238 atgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 337  Q
    |          ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |    
T  2925 a----------tgagtgaagtggc-ctgacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaa-ccccaaaatacccctaa 3012  T
Q  338 tgataagttaaaaaaatcaa 357  Q
    |||||| |||||||||||||    
T  3013 tgataaattaaaaaaatcaa 3032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 21511668 - 21511758
Alignment:
Q  261 cactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 351  Q
    |||||||| |||||||| |||  || ||||||||||||||||||||| ||||| | ||||||| |||||||||||  |||||| |||||||    
T  21511668 cactgacacgtcataatgtttttattttttatttttaaaagtatgtttaaaatataaaatacctaaaatacccctagtgataaattaaaaa 21511758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 12605133 - 12605064
Alignment:
Q  262 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacc 332  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || |||| |||||||||| ||||||||    
T  12605133 actgacacgtcataatttttatattttttatttttaaaagtatatttaaaa-gtgaaatacctaaaatacc 12605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 25482329 - 25482406
Alignment:
Q  262 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatga 340  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || |||| | |||||||| ||||||||||| ||||    
T  25482329 actgacacgtcataatttttatattttttatttttaaaagtatatttaaaa-gagaaatacctaaaatacccctaatga 25482406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 9307129 - 9307089
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  9307129 cttggagattccccctcgccatttgaatattctttgatttt 9307089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 7538329 - 7538413
Alignment:
Q  139 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 223  Q
    |||||||||||||||||  |   ||||||||||||| || |   ||| |||| || |||||||||||||||| ||||||||||||    
T  7538329 ttggagattccccctcgtaaaatgaagattctttgagttacccgcctaaggccatatgactggattaatgagatgatgtggcacg 7538413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 7849133 - 7849044
Alignment:
Q  262 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||||||||||||||| |  |||| |||||| | |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  7849133 actgacatgtcataatttttaatt--tttaattttaacattatgttaaaaagatgaaataccaaaaatacccttaatgataaattaaaaaaa 7849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 23526644 - 23526548
Alignment:
Q  258 tggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaat 354  Q
    ||||||||||| ||||| ||||||| || || |||||||  ||  ||| ||||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  23526644 tggcactgacacgtcattatttttatattttatatttttttaaaaatgctaaaaatgtgaaatacctaaaatacccttaatgataaattaaaaaaat 23526548  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 47578486 - 47578392
Alignment:
Q  258 tggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    ||||| ||||| |||||||||||| | | |||| ||||||||| |||||||||||  ||||||||  ||||||||| | ||||||| |||||||||    
T  47578486 tggcaatgacacgtcataattttttatt-ttttgtttttaaaattatgttaaaaagatgaaatacttaaaatacccttaatgataaattaaaaaaa 47578392  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 5737244 - 5737328
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 223  Q
    |||| ||||||||||| ||||||||||||||||||| ||| | |||| ||  | |||||||| |||||||| | ||||||||||||    
T  5737244 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacg 5737328  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 5769293 - 5769246
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgattttcaaccct 185  Q
    |||| ||||||||||| ||||||||||||||||||| |||| ||||||    
T  5769293 cttgtagattcccccttgccattagaagattctttggttttgaaccct 5769246  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 27491238 - 27491167
Alignment:
Q  162 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 233  Q
    |||||||||||| ||| || |||| | || |||||||||||| ||||||||||||||||||| |||||||||    
T  27491238 gaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgctaactgtgt 27491167  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 27491124 - 27491059
Alignment:
Q  287 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||||||| |||||| ||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  27491124 ttttatttttaaaattatgtt-aaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 27491059  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 29043555 - 29043524
Alignment:
Q  192 atctgactggattaatgagctgatgtggcacg 223  Q
    ||||||||||||||||||||||||||||||||    
T  29043555 atctgactggattaatgagctgatgtggcacg 29043524  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 29043474 - 29043412
Alignment:
Q  291 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 353  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| ||| |||||    
T  29043474 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattacaaaaa 29043412  T

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Target: scaffold0408 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 10087 - 10117
Alignment:
Q  84 gggttaataggcttttacccctgccatttgg 114  Q
    |||||||||||||||||||||||||||||||    
T  10087 gggttaataggcttttacccctgccatttgg 10117  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 10853 - 10893
Alignment:
Q  138 cttggagattccccctcgccattagaagattctttgatttt 178  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  10853 cttggaaattccccctcgccatttgaagattctttggtttt 10893  T

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