View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3534_high_2 (Length: 516)
Name: NF3534_high_2
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3534_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 246 - 500
Target Start/End: Original strand, 26804105 - 26804357
Alignment:
| Q |
246 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaattataaatcttttaaaatatttataactaccaattacctgaa |
345 |
Q |
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| T |
26804105 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaatta--aatcttttaaaatatttataactaccaattacctgaa |
26804202 |
T |
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| Q |
346 |
ttggttgtgatgaagctgcatctcttctcctcttgattagtagtctttgaatcaagagcacttgaaggatcaataggaaaaactctttcaaatttagcag |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26804203 |
ttggttgtgatgaagctgcatctcttctcctcttgattagtagtctttgaatcaagagcacttgaaggatcaataggaaaaactctttcaaatttagcag |
26804302 |
T |
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| Q |
446 |
attttgatcttccataatgagcaatcttcattttcctttgtgcttgctgaagtgc |
500 |
Q |
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| T |
26804303 |
attttgatcttccataatgagcaatcttcattttcctttgtgcttgctgaagtgc |
26804357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 26803812 - 26804048
Alignment:
| Q |
11 |
cataggtgtgtgagagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt |
110 |
Q |
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| T |
26803812 |
cataggtgtgtgagagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt |
26803911 |
T |
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| Q |
111 |
atcaaaagagacattaaagttaacacttgttgctttaagataaaacaaaattgcactaagtatcaaaaagggtacatatgaatttgtattaaaatatgag |
210 |
Q |
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| T |
26803912 |
atcaaaagagacattaaagttaacacttgttgctttaagataaaacaaaattgcactaaatatcaaaaagggtacctatgaatttgtattaaaatatgag |
26804011 |
T |
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| Q |
211 |
tttagtttttataaacctataataaattaaactatca |
247 |
Q |
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| T |
26804012 |
tttagtttttataaacctataataaattaaactatca |
26804048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 18416999 - 18417082
Alignment:
| Q |
41 |
acttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt-atcaaaagagaca |
123 |
Q |
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| T |
18416999 |
acttacttgtcatcatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaaaagagaca |
18417082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 18417858 - 18417915
Alignment:
| Q |
425 |
aaactctttcaaatttagcagattttgatcttccataatgagcaatcttcattttcct |
482 |
Q |
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| T |
18417858 |
aaacactttcaaattttgcagactttgatcttccataatgagcaatcttcattttcct |
18417915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 54546811 - 54546851
Alignment:
| Q |
44 |
tacttgtcatcatgaactggaactccccattcttcatcatg |
84 |
Q |
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| T |
54546811 |
tacttgtcgtcatgtactggaactccccattcttcatcatg |
54546851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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