View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3534_high_6 (Length: 250)
Name: NF3534_high_6
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3534_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39045219 - 39045456
Alignment:
| Q |
1 |
taatataaatttggacggttgtgctttgtttatggtaattcattgattaatggagaattctttaattaattgatgttattactgtttattgctggcttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39045219 |
taatataaatttggacggttgtgctttgtttatggtaattcattgattaatggagaattctttaattaattgatgttattactgtttattgctggcttgt |
39045318 |
T |
|
| Q |
101 |
ggtcaagtttcatgggtgtactgtagtagcattttgatgtctcgtgatcgtgagttcagaaacggttcacgtgttggttttaatggagtagagtgggtga |
200 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39045319 |
ggtcaaggt-catgggtgtactgtagtagcattttgatgtctcgtgatcgtgagttcagaaacggttcacgtgttggttttaatggagtagagtgggtga |
39045417 |
T |
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| Q |
201 |
tgaggacgtggccactactactcctgcactgcactctct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39045418 |
tgaggacgtggccactactactcctgcactgcactctct |
39045456 |
T |
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