View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3534_high_8 (Length: 234)
Name: NF3534_high_8
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3534_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 41088876 - 41089088
Alignment:
| Q |
8 |
gtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgcaatctagatattttgaggcatctgctgttaatattc |
107 |
Q |
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| T |
41088876 |
gtctctttcttgtgccaattcgcagtattatgctagtttggggtaggcgtgcggatgtg--tgtaatctgcatattttgaggcagctactgttaatattc |
41088973 |
T |
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| Q |
108 |
taggtaatgtattttgtataatatgcatatatgaggcagctgcttctattttatatcatggtggagtttgataagccggggtctgatgtggtttcttgac |
207 |
Q |
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| T |
41088974 |
taggtaatttattttgtataatctacatatatgaggcagctgcttctattttatatcatggtggagtttgataagccggggtctgatgtggtttcttgac |
41089073 |
T |
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| Q |
208 |
a-gaaatgccatttt |
221 |
Q |
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| T |
41089074 |
aggaaatggcatttt |
41089088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41103297 - 41103397
Alignment:
| Q |
1 |
ttgtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgcaatctagatattttgaggcatctgctgtt |
100 |
Q |
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| T |
41103297 |
ttgtggagtctctttctcgtgccaattcacagtaatatgctagtttggcgtaggcgtgcagatatggatgtaatctagatattttgaggcatctgctgtt |
41103396 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
41103397 |
a |
41103397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 41080935 - 41081078
Alignment:
| Q |
79 |
atattttgaggcatctgctgttaatattctaggtaatgtattttgtataatatgcatatatgaggcagctgcttctattttatatcatggtggagtttga |
178 |
Q |
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| T |
41080935 |
atattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatga |
41081034 |
T |
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| Q |
179 |
taagccggggtctgatgtggtttcttgaca-gaaatgccatttt |
221 |
Q |
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| T |
41081035 |
taagtaggggggttatgtcgtttcttgacaggaaatggcatttt |
41081078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 41103381 - 41103463
Alignment:
| Q |
139 |
tgaggcagctgcttctattttatatcatggtggagtttgataagccggggtctgatgtggtttcttgacagaaatgccatttt |
221 |
Q |
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| T |
41103381 |
tgaggcatctgctgttattttatatcatggtggagtttgataagccagggtctgatgtggtttcttgacagaaatgccatttt |
41103463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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