View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3534_low_4 (Length: 381)
Name: NF3534_low_4
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3534_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 42473816 - 42474172
Alignment:
| Q |
11 |
cagagattgcattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgct |
110 |
Q |
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| T |
42473816 |
cagagatcgcattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgct |
42473915 |
T |
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| Q |
111 |
ccaacatcaactggatgtgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactg |
210 |
Q |
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| T |
42473916 |
ccaacatcaactggatgtgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactg |
42474015 |
T |
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| Q |
211 |
ttaa-tatgacgcggtactctcctgtagcatcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggt |
309 |
Q |
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| T |
42474016 |
ttaattattacgcggtactctcctgtagcatcatgtgcaataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggt |
42474115 |
T |
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| Q |
310 |
gtttgacccacttgattgcacttggagtgttctcgaagtacctccgcccaaatgcct |
366 |
Q |
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| T |
42474116 |
gtttgacccacttgattgcacttggagtgttctcgaagtacctccgcccaaatgcct |
42474172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 42479363 - 42479707
Alignment:
| Q |
20 |
cattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatca |
119 |
Q |
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| T |
42479363 |
cattttctctctctttaatccctttactagggatctgatcacgctgccaaaatttgacaggacatatcaaattgctgccttctcatgtgctccaacatca |
42479462 |
T |
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| Q |
120 |
actggatgtgttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaa-tatg |
218 |
Q |
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| T |
42479463 |
actggatgtgttatattaattttcagacgtgttggttctagtcttgtagctataagcacgtgttatcctggggaaaaagaatggaccactgttaattatg |
42479562 |
T |
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| Q |
219 |
acgcggtactctcctgtagcatcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggttggctaggggtgtttgaccc |
318 |
Q |
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| T |
42479563 |
acgcggaactctcatgtag---catgtgcgataagcttgtcttttctaatgggttattttattgtctgagcgacagaggttggctaggggtgtttgaccc |
42479659 |
T |
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| Q |
319 |
acttgattgcacttggagtgttctcgaagtacctccgcccaaatgcct |
366 |
Q |
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| T |
42479660 |
acttgaacgtacttggactgttttcaaagtacctccgcccaaatgcct |
42479707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 42467416 - 42467510
Alignment:
| Q |
272 |
ttattttattgtcttagccacacaggttggctaggggtgtttgacccacttgattgcacttggagtgttctcgaagtacctccgcccaaatgcct |
366 |
Q |
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| T |
42467416 |
ttattttattgtttaagccacactggttgtctacgggtgtttgacccaattgaatatacttggagcgttctcgttgtacctccgcccaaatgcct |
42467510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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