View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3534_low_5 (Length: 348)
Name: NF3534_low_5
Description: NF3534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3534_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 5281764 - 5282081
Alignment:
| Q |
13 |
aatatgaattgcgactagaataaagttgattagcagacgtaacaataataaaatgcctctgttttgatttgatcttttacatcttagtaatgtttagctc |
112 |
Q |
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| T |
5281764 |
aatatgaattgcgacaagaataaagttgattagtagacgtaacaataataaaatgcctctgttttgatttgatcttttacatcttagtcatgtttagctc |
5281863 |
T |
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| Q |
113 |
ggcaattnnnnnnntttagactaaattcaaattaatttttgttaatgcgagtgaaaaataaaatactttagtagcgagaccaaaagtacaattaaataca |
212 |
Q |
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| T |
5281864 |
ggcaattaaaaaaatttagactaaattcaaattaatttttgttaatgtaagtgaaaaataaaatacgttattagcgagaccaaaaatacaattaaataca |
5281963 |
T |
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| Q |
213 |
ttttccatatcatatataggaactgttgtatgaaggtgcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactcgtagaatc |
312 |
Q |
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| T |
5281964 |
ttttccatatcatatatatgaactgttgtatgaaggtgcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactcgtagaatc |
5282063 |
T |
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| Q |
313 |
acataacactatcaatga |
330 |
Q |
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| T |
5282064 |
acataacactatcaatga |
5282081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 5254685 - 5254845
Alignment:
| Q |
13 |
aatatgaattgcgactagaataaagt--tgattagcagacgtaacaataataaaatgcctctgttttgatttgatcttttacatcttagtaatgtttagc |
110 |
Q |
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| T |
5254685 |
aatatgaattgctactagaataaagtaatatttagtagatgtgacaataataaaatgcctctgttttg-----atcttttaaatcttactaatgtttagc |
5254779 |
T |
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| Q |
111 |
tcggcaattnnnnnnntttagactaaattcaaattaatttttgttaatgcgagtgaaaaataaaat |
176 |
Q |
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| T |
5254780 |
tcggcaattaaaaaaatttagactatattcaaattaattatttttaatgtaagggtaaaataaaat |
5254845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 5180346 - 5180400
Alignment:
| Q |
250 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactc |
304 |
Q |
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| T |
5180346 |
gcaggttttattgtaaggagtcaagtgttaacctcagagacatgtgaatgaactc |
5180400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 5180037 - 5180095
Alignment:
| Q |
60 |
ataaaatgcctctgttttgatttgatcttttacatcttagtaatgtttagctcggcaatt |
119 |
Q |
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| T |
5180037 |
ataaaatgcctctgttttgatttgatctttta-atcttagtaatttttagctcggcaatt |
5180095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 5254901 - 5254955
Alignment:
| Q |
250 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactc |
304 |
Q |
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| T |
5254901 |
gcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatgaactc |
5254955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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