View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3535_high_3 (Length: 499)
Name: NF3535_high_3
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 14135326 - 14134864
Alignment:
| Q |
10 |
acatcatcaacacttagtgacttgaaaaacgatgaagtcgcataattgtgtatcatatcacgggtcacaagaaaaaagcacaatgaggtcacattgtgtg |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
14135326 |
acatcatcaacacttagtgactcgaaaaacgatgaagtcgcatacttgtgtatcatatcacgggtcacaagaaaaa-gcacaatgaggccacatggtgtg |
14135228 |
T |
|
| Q |
110 |
tagtgtgtatggttaaaaagggtgtgtatgcaacatttccaatttcaaaatttggtaacattaaccaaaactactgtactagacgtcttaatttgttttg |
209 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14135227 |
ta-------tggttaaaaaggatgtgtatgcaacatttccaatttcaaaatttggtaacattaaccaaaactactgtactagacgccttaatttgttttg |
14135135 |
T |
|
| Q |
210 |
agaaatcaaaattatccttaactatggtgtaaatatcaatttatttt-aaattacacgagtattgatttgtcaatacaattttggacagagggtggaatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14135134 |
cgaaatcaaaattatccttaactatggtgtaaatatcaatttatttttaaattacaagagtattgatttgtcaatacaattttggacagagggtggaatt |
14135035 |
T |
|
| Q |
309 |
tctcattcttgtgtaaattttaagcatgagcaatacatattttctcgaaggtgaaatatcaaagctatatcttcccttgaactaatggagt---taagta |
405 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14135034 |
tctcattcttgtataaattttaagcatgagcaatacatattttcttgaaggtgaaatatcaaagctatatcttcccttgaactaatggagttaataagta |
14134935 |
T |
|
| Q |
406 |
aagtaacatgaggtgaaatggacttacaatatctaccaatcaattagtgcaattataaactttatctaccc |
476 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14134934 |
aagtaacatgaggtgaaatggacgtacaatatctaccaatcaattagtgcaattataaactttatctaccc |
14134864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University