View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_high_4 (Length: 488)
Name: NF3535_high_4
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 5401246 - 5401703
Alignment:
| Q |
13 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401246 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
5401345 |
T |
|
| Q |
113 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatcttaccgat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
5401346 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttaccgat |
5401445 |
T |
|
| Q |
213 |
gatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaac |
312 |
Q |
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| T |
5401446 |
gatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaac |
5401545 |
T |
|
| Q |
313 |
atggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaatt |
412 |
Q |
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| T |
5401546 |
atggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaatt |
5401645 |
T |
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| Q |
413 |
caacatcgttttgattggagacatcacactgaatatagtgaacagggttatcaacatt |
470 |
Q |
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| T |
5401646 |
caacatcgttttgattggagacatcacactgaatatagtgaacagggttatcaacatt |
5401703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 101 - 456
Target Start/End: Original strand, 5395187 - 5395542
Alignment:
| Q |
101 |
atgcactaacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggttt |
200 |
Q |
| |
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|||||| ||||||||| |||||||||||||| |||||||||||||||||||||| | || |||||||| | ||| |||||||||||||| || | || |
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| T |
5395187 |
atgcaccaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggcctt |
5395286 |
T |
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| Q |
201 |
gatcttaccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaagg |
300 |
Q |
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| T |
5395287 |
gatcttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaagg |
5395386 |
T |
|
| Q |
301 |
acgttcctcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaagggg |
400 |
Q |
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| T |
5395387 |
acgttccttaacattgaaccgttaacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggag |
5395486 |
T |
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| Q |
401 |
atagcttcaattcaacatcgttttgattggagacatcacactgaatatagtgaaca |
456 |
Q |
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| T |
5395487 |
agagcttcaattcgacgtctttttggtcagagacatcgcattgaatgtagtgaaca |
5395542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 108 - 456
Target Start/End: Original strand, 5391383 - 5391731
Alignment:
| Q |
108 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatctta |
207 |
Q |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | || |||||||| | ||| ||||| |||||||| || || ||||||||| |
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| T |
5391383 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
5391482 |
T |
|
| Q |
208 |
ccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
307 |
Q |
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|||| |||||||||| ||| | ||||||||| || || ||||| |||||||| ||||||| ||| ||||||||| |||||| |||||||||||| |
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| T |
5391483 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
5391582 |
T |
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| Q |
308 |
tcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagctt |
407 |
Q |
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| T |
5391583 |
ttaacattgaaccgttaactttgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagctt |
5391682 |
T |
|
| Q |
408 |
caattcaacatcgttttgattggagacatcacactgaatatagtgaaca |
456 |
Q |
| |
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| T |
5391683 |
caattcaacgtctttttgatcagagacatcgcattgaatgtagtcaaca |
5391731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 47349625 - 47349558
Alignment:
| Q |
220 |
aagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggat |
287 |
Q |
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| T |
47349625 |
aagggtcctaaatagtgtttcccaccagtttgaagagacacgtggcagagattcggagcatttgggat |
47349558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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