View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_high_7 (Length: 396)
Name: NF3535_high_7
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 9610319 - 9610706
Alignment:
| Q |
9 |
acatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattctctaagcttacaagcttaggaag |
108 |
Q |
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| T |
9610319 |
acatcatcacctaagaagttgtcacattcttttctaagttccctttttctaaaccacccttttccaagtccaaattctctaagcttacaagcttaggaag |
9610418 |
T |
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| Q |
109 |
atctactttgtttggttcttcaataacagcttttcttttccaatatttgcagtggagaaccagctggaggattcctaagggagttccaatcacacttggt |
208 |
Q |
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| T |
9610419 |
atctactttgtttggttcttcaataacaacttttcttttccaatatttgcagtggagaaccagctggaggattcctaagggagttccaatcacacttggt |
9610518 |
T |
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| Q |
209 |
ccctattaaaaccaacaacatcaatgtcaataagattctcttatgttattaataattttaattatcaaataaattatccgaaaatgacacaaaccgcaac |
308 |
Q |
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| T |
9610519 |
ccctattaaaaccaacaacatcaatgtcaataagattatcttatgttattaataattttaattatcaaataaattatccgaaaatgacacaaaccgcaac |
9610618 |
T |
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| Q |
309 |
gaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtggcatgaattcc |
396 |
Q |
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| T |
9610619 |
gaatatatccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataaaggtagtggcatgaattcc |
9610706 |
T |
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