View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_high_8 (Length: 374)
Name: NF3535_high_8
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 9706382 - 9706193
Alignment:
| Q |
9 |
acatcatcagaagtcagtgattccatgtctgcacctgatggggttgttgaaaatccttcacctgttgagttaatgggtcattctccacctgctagcccta |
108 |
Q |
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| T |
9706382 |
acatcatcagaagtcagtgattccatgtctgcacctgatggggttgttgaaaatccttcacctgttgagttaatgggtcattctccacctgctagcccta |
9706283 |
T |
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| Q |
109 |
gaacaactcaatctcctttaatgttcactcctcaagtaaaaatctctccttttctatctctttcaccttttccctaatattcctcaaaaa |
198 |
Q |
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| T |
9706282 |
gaacaactcaatctcctttaatgttcactcctcaagtaaaaatctctccttttctatctctttcaccttttccatagtattcctcaaaaa |
9706193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 9706127 - 9706021
Alignment:
| Q |
252 |
gataaatgggtgtgtctgattcagtaccttaggttttgtttttgatttgatgtttattatgattatgtctggnnnnnnnacatgtctttgtaatttgagg |
351 |
Q |
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| T |
9706127 |
gataaatgggtgtgtctgattcagtaccttaggttttgtttttgatttgatgttaattatgattatgtctggtttttttacatgtctttgtaatttgagg |
9706028 |
T |
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| Q |
352 |
ttatgct |
358 |
Q |
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||||||| |
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| T |
9706027 |
ttatgct |
9706021 |
T |
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