View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_low_15 (Length: 240)
Name: NF3535_low_15
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_15 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 34800290 - 34800077
Alignment:
| Q |
12 |
tcgttcactgggagtgttggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggt |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800290 |
tcgttcactgggagtgatggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggt |
34800191 |
T |
|
| Q |
112 |
gcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800190 |
gcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaag |
34800091 |
T |
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| Q |
212 |
gtaccggttttatg |
225 |
Q |
| |
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|||||||||||||| |
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| T |
34800090 |
gtaccggttttatg |
34800077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 11888863 - 11889043
Alignment:
| Q |
27 |
gttggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtat |
126 |
Q |
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||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||| ||||||| |||||||||||||||| | |||||||| | || |
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| T |
11888863 |
gttggaatggggccaagacaaataagaaggttcgtaagtggtaccggttgatttggcatcccgcggtttggagtatttggagggcgagaaatgat-gcat |
11888961 |
T |
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| Q |
127 |
ctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaaggtacc |
216 |
Q |
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| T |
11888962 |
ttttaacaatttaatttgtgg------gga--tagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtacc |
11889043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 1611490 - 1611691
Alignment:
| Q |
13 |
cgttcactgggagtgttggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggt----gtggagtatttggag |
108 |
Q |
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||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
1611490 |
cgttcacggggagtgttggaacggagcagtgacaaataagaaggttcgtaaagggtatcaattgatttgccatgccgcggtttaattggagtatttggag |
1611589 |
T |
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| Q |
109 |
ggtgcgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttg |
208 |
Q |
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| T |
1611590 |
ggtgaggaatgatcgcatttttaataatgtaatttgtggggcggcggagttagtggaggcgattaaggttttgttgtggaggtgcatgttgagtcgtttg |
1611689 |
T |
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| Q |
209 |
aa |
210 |
Q |
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|| |
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| T |
1611690 |
aa |
1611691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 13725836 - 13725996
Alignment:
| Q |
47 |
aataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtg |
146 |
Q |
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||||| ||| |||||| ||| | || |||||||||||| |||||||| |||||| | ||||||| | |||||||||| || || |||||| || ||||| |
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| T |
13725836 |
aataataagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaataattctaattgtg |
13725935 |
T |
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| Q |
147 |
gagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgttt |
207 |
Q |
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| T |
13725936 |
atgttgctgagatagtggaggcaattaaggtttttccgtggaggtggactttgagtcgttt |
13725996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 5037951 - 5038109
Alignment:
| Q |
47 |
aataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtg |
146 |
Q |
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||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||||| || ||| |||||| ||||||||| ||||| |
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| T |
5037951 |
aataagaagattcgtaaaggttactggttgatttggcatgccaaggtttggaatatttggaggctgagaacccgtcgtatttttaataatacagtttgtg |
5038050 |
T |
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| Q |
147 |
gagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgt |
205 |
Q |
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| T |
5038051 |
gggtggcggagacggtggaggcgattaaggttttatcgtggagatgggtgttgagtcgt |
5038109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 26728809 - 26728855
Alignment:
| Q |
74 |
ttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatga |
120 |
Q |
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| T |
26728809 |
ttgatttggcatgccgtggtgtggagtatatggagggcgagaaatga |
26728855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 15858392 - 15858588
Alignment:
| Q |
14 |
gttcactgggagtgttggaatggggcagtgtcaaataagaaggttcgtaaagggtatcag-ttgatttggcatgccgcggtgtggagtatttggagggtg |
112 |
Q |
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||||| ||||||||||||| |||||| | ||||||||||||||| || || |||| |||| |||||||||||||| ||||| |||||||||||||||||| |
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| T |
15858392 |
gttcattgggagtgttggagtggggcggagtcaaataagaaggtccgaaacgggt-tcaggttgatttggcatgctgcggtttggagtatttggagggtg |
15858490 |
T |
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| Q |
113 |
cgaaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaa |
210 |
Q |
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|||| || ||||| ||||| ||| | ||||| || | |||||||||||||||||| |||||| ||| ||||||||||||||| || |||||||| |
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| T |
15858491 |
agaaacgaccgtatttttaacggtgtaaattgtgaagtggtggagttagtggaggcgatcaaggttctgtcgtggagatggatgttaagccgtttgaa |
15858588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 2432 - 2621
Alignment:
| Q |
15 |
ttcactgggagtgttggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcg |
114 |
Q |
| |
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|||| ||||||||||||| ||||| | ||||| |||||| |||||||||| || |||||||||||| |||||||| |||||||||||||||||| | |
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| T |
2432 |
ttcattgggagtgttggagtgggggtgaatcaaagaagaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag |
2531 |
T |
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| Q |
115 |
aaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcg |
204 |
Q |
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||||||||| ||||||| ||| | |||||| | | |||| | || ||||||||||||||||| | |||||||||| |||||||||| |
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| T |
2532 |
aaatgatcgcatctttacaaatacaatttgtggggtagtggaggtggtagaggcgattaaggttttatcgtggagatgggtgttgagtcg |
2621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 10909593 - 10909433
Alignment:
| Q |
47 |
aataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcgaaatgatcgtatctttaataatgttacttgtg |
146 |
Q |
| |
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||||| ||| |||||| ||| | || |||||||||||| |||||||| |||||| | ||||||||| |||||||||| || || |||||| || ||||| |
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| T |
10909593 |
aataataagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtg |
10909494 |
T |
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| Q |
147 |
gagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgttt |
207 |
Q |
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| ||| ||| || ||||||||||||||||||||| |||||| |||| ||||||||||| |
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|
| T |
10909493 |
atgttgctgagatattggaggcgattaaggttttgtcgtggaggtggactttgagtcgttt |
10909433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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