View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_low_18 (Length: 221)
Name: NF3535_low_18
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 32706283 - 32706083
Alignment:
| Q |
1 |
ctcaatgattgatatgtaggtaaaacattaaacaccgacaatcttaaactatcttgcaatgagctaaacaaaatctgaataagatgtctatcaacactaa |
100 |
Q |
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| T |
32706283 |
ctcaatgattgatatgtaggtaaa-cattaaacaccgacaatcttaaactatcatgcaatgagctaaacaaaatctgaataagatgtctatcaacactaa |
32706185 |
T |
|
| Q |
101 |
cactcaacaaggtgagatattttaagaatcgaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaa |
200 |
Q |
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| T |
32706184 |
cactcaacaaggtgagatattttaagaattgtaattttagaatagagttcaacttgatataaaacgtctacacagaggaataaaagaaagctgactctaa |
32706085 |
T |
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| Q |
201 |
aa |
202 |
Q |
| |
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|| |
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| T |
32706084 |
aa |
32706083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 32718373 - 32718289
Alignment:
| Q |
131 |
gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctact |
215 |
Q |
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| T |
32718373 |
gaaattttagaatagagttcaacttgatgtaaaacgtctacacagaggaatacagaaaagcagactccaaaaacaaccagctact |
32718289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 32724778 - 32724694
Alignment:
| Q |
131 |
gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctact |
215 |
Q |
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| T |
32724778 |
gaaattttagaatagagttcaacttgatgtaaaacgtctacacagaggaatacagaaaagcagactccaaaaacaaccagctact |
32724694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 32718472 - 32718419
Alignment:
| Q |
64 |
ctaaacaaaatctgaataagatgtctatcaacactaacactcaacaaggtgaga |
117 |
Q |
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| T |
32718472 |
ctaaacaaaatgtgaataagatgtctatcaccactaacactaaacaaggtgaga |
32718419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 32724877 - 32724824
Alignment:
| Q |
64 |
ctaaacaaaatctgaataagatgtctatcaacactaacactcaacaaggtgaga |
117 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |
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| T |
32724877 |
ctaaacaaaatgtgaataagatgtctatcaccactaacactaaacaaggtgaga |
32724824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 14903644 - 14903720
Alignment:
| Q |
131 |
gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaac |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
14903644 |
gaaattttagaataaagttcaacttgatataaataatctacatagaggaatacaagaaagttgactccaaaaccaac |
14903720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 2999461 - 2999402
Alignment:
| Q |
159 |
ataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctactaaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
2999461 |
ataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaactgactactaaa |
2999402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 2999553 - 2999481
Alignment:
| Q |
64 |
ctaaacaaaatctgaataagatgtctat-------caacactaacactcaacaaggtgagatattttaagaat |
129 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
2999553 |
ctaaacaaaatctgaataagatgtctattaccattcaccactaacactcaacaaggtgagatattttgagaat |
2999481 |
T |
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