View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_low_19 (Length: 214)
Name: NF3535_low_19
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25347374 - 25347561
Alignment:
| Q |
1 |
agaaatttcaaaaaagggtagggcaataatagcaaaataatttccttttattgaccatgtgaacaagtcagtttgactcttgtgttattctggcagctat |
100 |
Q |
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| T |
25347374 |
agaaatttcaaaaaagggta-----ataacagcaaaatgatttccttttattgaccatgtgaacaaatcagtttgactc--gtgttattcttgcagctat |
25347466 |
T |
|
| Q |
101 |
tcagacgcaaaaagagttagctgagcagttgaaggacctcccnnnnnnnntggaggtaatatagttaatgataaacattaaataatcagctattg |
195 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25347467 |
tcagacgcagaaagagttagctgagcagctgaaggacctcccaaaaaaaatggaggtaatatagttaatgataaacattaaataatcagctattg |
25347561 |
T |
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