View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_low_2 (Length: 543)
Name: NF3535_low_2
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 3131901 - 3131387
Alignment:
| Q |
10 |
gcagagagccctagtcatcaaagctcccaagaatcaaaccttcagtgtctctccatcggagaaagctcgccgctaccaagaatacactcgcctaagacaa |
109 |
Q |
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| T |
3131901 |
gcagagagccctagtcatcaaagctcccaagaatcaaaccttcagtgtctctccatcggagaaagctcgccgctaccaagaatacactcgcctaagacaa |
3131802 |
T |
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| Q |
110 |
cgccctaaccggcgatgccgttgcttttgttggtttatggcattaaccttcctcctcatcgtgctcctcggtattgccactggcactctctacctcattc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3131801 |
cgccctaaccggcgatgccgttgcttttgttggtttatggcattaaccttcctcctcatcgtgctcctcggtattgctactggcactctctacctcattc |
3131702 |
T |
|
| Q |
210 |
tccgtcccaaggcgctgaaatactctatccaagacatcaacatcaaaggaatgaacacaacatggccatcgtctgaggcaaccatattgccgaagtttga |
309 |
Q |
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| T |
3131701 |
tccgtcccaaggcgctgaaatactctatccaagacatcaacatcaaaggaatgaacacaacatggccatcgtctgaggcaaccatattgccgaagtttga |
3131602 |
T |
|
| Q |
310 |
cctcactgttagggctagtaacccaaacgacaagattgaaatcttttatgagaaagataactctgctgaaatattttataacaacgtgaagctgtgtagc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131601 |
cctcactgttagggctagtaacccaaacgacaagattgaaatcttttatgagaaagataactctgctgaaatattttataacaacgtgaagctgtgtaaa |
3131502 |
T |
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| Q |
410 |
ggcgttttgccagagttttatcaaccatcaaataatgtgacggtattaaagacggtgttagaagggatcaagctaggaagagaggatcaaaaagcgttgg |
509 |
Q |
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| T |
3131501 |
ggcgttttgccagagttttatcaaccatcaaataatgtgacggtattaaagacggtgttagaagggatcaagctaggaagagaggatcaaaaagcgttgg |
3131402 |
T |
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| Q |
510 |
tggaggtgcagactg |
524 |
Q |
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| T |
3131401 |
tggaggtgcagactg |
3131387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 474
Target Start/End: Complemental strand, 38058469 - 38058323
Alignment:
| Q |
328 |
taacccaaacgacaagattgaaatcttttatgagaaagataactctgctgaaatattttataacaacgtgaagctgtgtagcggcgttttgccagagttt |
427 |
Q |
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|||||| || |||||||||| ||| |||||||||||||| |||||| ||||| || ||||| || ||| ||| |||| ||| |||||||| |||| |
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| T |
38058469 |
taaccctaatgacaagattggaataagttatgagaaagatagctctgccgaaatcttctataaagacatgaggctatgtaatggcattttgccatcgttt |
38058370 |
T |
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| Q |
428 |
tatcaaccatcaaataatgtgacggtattaaagacggtgttagaagg |
474 |
Q |
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| T |
38058369 |
tatcaaccgtcaaataatgtaacagtgttcaagacgatgttaaaagg |
38058323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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