View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3535_low_20 (Length: 212)
Name: NF3535_low_20
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 41561257 - 41561074
Alignment:
| Q |
15 |
cagagagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcataacaaaacattaacaaaagacgcatgctataaaat |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41561257 |
cagacagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcataacaaaacattaacaaaagacgcatgctataaaat |
41561158 |
T |
|
| Q |
115 |
ctcaaaccagtagacagatgtaatgtaaataaatgttacctccattgtggcacctccctttgcaggtagcacctaagcaacatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41561157 |
ctcaaaccagtagacagatgtaatgtaaataaatgttacctccattgtggcacctccctttgcaggtagcacctaagcaacatg |
41561074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 41545091 - 41544898
Alignment:
| Q |
15 |
cagagagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcataacaaaacattaacaaaagacgcatgctataaaat |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41545091 |
cagatagtgcttcgatttcaaacttcactcctttctgcaacatcattctaagctccaaccttcataacaaaacattaacataagacacatgctataaaat |
41544992 |
T |
|
| Q |
115 |
ctcaaaccagt---------agacagatgtaatgtaaata-aatgttacctccattgtggcacctccctttgcaggtagcacctaagcaacatg |
198 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41544991 |
ctcaaaccagttgaacaaaaagacagatggaatgtatatataatattacctccattctgggacctccctttgcaggtagcacctaagcaacatg |
41544898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University