View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3535_low_7 (Length: 459)
Name: NF3535_low_7
Description: NF3535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3535_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 4859274 - 4858843
Alignment:
| Q |
12 |
aacctgtgttttttacaacttctttatattcatctaatttctttactgctgttttaataccatttattttggattgggattgatgctttacaacggttgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4859274 |
aacctgtgttttttacaacttctttatattcatctaatttctttactgctgttttaataccatttatttttgattgggattgatgctttacaacggttgt |
4859175 |
T |
|
| Q |
112 |
acataggatttgcacatttggtcatcgaaggttctccagtattttaaaaccagaacagtacttttcaaaacttggttaaatgtattgatctnnnnnnnca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4859174 |
acataggatttgcacatttggtcatcgaaggttctccagtattttaaaaccagaacagtacttttcaaaacttggttaaatgtattgatctaaaaaaaca |
4859075 |
T |
|
| Q |
212 |
aattggttaaatgtatcatttatttctaggctgaaaatacttacgtattcaattttttcttctttagtttttcatacatttgtcctttattttgtcaaaa |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4859074 |
aattggttaaatgtatcatttatttcgaggctgaaaatacttacgtattcaattttttcttctttagtttttcatacatttgtcctttattttgttaaaa |
4858975 |
T |
|
| Q |
312 |
caacacgctctttaatttgtaaaaagaaaactgtgcactaatcaaattgttttagcttactcttctaatttattaaagtaataacgtgaaaaaacttcac |
411 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858974 |
caacacactctttaatttgtaaaaagaaaactgtgcactaatcaaattgttttagcttactcttctaatttattaaagtaataacgtgaaaaaacttcat |
4858875 |
T |
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| Q |
412 |
gtatatttcgttagtactagtaattatggagt |
443 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4858874 |
gtatatttcgttagtactagtaattatggagt |
4858843 |
T |
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