View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_1 (Length: 723)
Name: NF3536_high_1
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 2494168 - 2494587
Alignment:
| Q |
16 |
tcttcatcttcaagaggtagctgaaaactcttaacaccatcattaatattctcattgttgttaaggttttctcgtttggctaaagtgtttttgttgttat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
2494168 |
tcttcatcttcaagaggtagctgaaaactcttaacaccatcattaatatcattgttagtgttaatgttttctcgtttagctaaagtgttcttgttgttat |
2494267 |
T |
|
| Q |
116 |
gcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacccaactttctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494268 |
gcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgcatcttccacccaactttctc |
2494367 |
T |
|
| Q |
216 |
agcaaatttcagcatcttatctttctgatcttgtgtaaactttgtcctgaaacgctttctagaattgttagagtgagaattcatcaacatagtttggttt |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
2494368 |
agcaaatttcagcatcttatccttctgatcttgtgtaaactttgtcctgaaacgctttcttgaattgttagagtgagaattcatcaacatggtttggttt |
2494467 |
T |
|
| Q |
316 |
ggagctgcaacgttttccggtaaggcggcggagagagcaagaagcatgtgaggggcggaggggtagtaggaagatgagatcggtggtggtgaagaggaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494468 |
ggagctgcaacgttttccggtaaggcggcggagagagcaagaagcatgtgaggggcggaggggtagtaggaagatgagatcggtggtggtgaagaggaat |
2494567 |
T |
|
| Q |
416 |
ttgggctccggtgagagaac |
435 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2494568 |
ttgggctccggtgagagaac |
2494587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 501 - 674
Target Start/End: Original strand, 2494650 - 2494823
Alignment:
| Q |
501 |
gagtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494650 |
gagtggtggctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgat |
2494749 |
T |
|
| Q |
601 |
gtcatgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
674 |
Q |
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| T |
2494750 |
gtcatgaattcaccacagccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
2494823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 511 - 674
Target Start/End: Original strand, 3683923 - 3684086
Alignment:
| Q |
511 |
tcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgctgttggtgatgtcatgaatt |
610 |
Q |
| |
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||||| ||||||||||||||||| || ||||| || ||||| || |||||||||| ||| | ||||| | || || |||||||||| |||||||| |
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| T |
3683923 |
tcttccggttcacggcggtggaaattccggtgacaaccacatgcggcacattttatggaggcagggtcatcggaggtggcggttggtgatggcatgaatt |
3684022 |
T |
|
| Q |
611 |
caccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
674 |
Q |
| |
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||| ||| || ||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
3684023 |
cacaacaaccgtctagggcatgaccacctagggttgccacgtggtttttgagacattctttgta |
3684086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 3683515 - 3683641
Alignment:
| Q |
97 |
aaagtgtttttgttgttatgcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgca |
196 |
Q |
| |
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|||||||| || || |||||||||||||| || |||||||| | ||||||||||| |||||| ||||| ||| || | ||| |||||| | ||||||| |
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| T |
3683515 |
aaagtgttcttattattatgcatccaaactttgagaacacttctatcaacaccaacttcattgcaaaaaccattcaccatttcttcatctctcttctgca |
3683614 |
T |
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| Q |
197 |
tcttccacccaactttctcagcaaatt |
223 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
3683615 |
tcttccacccaactttatcagcaaatt |
3683641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 509 - 674
Target Start/End: Complemental strand, 24181229 - 24181064
Alignment:
| Q |
509 |
gctcttctggttcacggcggtggaagttacggtggcagccacaagcagcacattttaaggatgttgggtcggttggtgttgct-gttggtgatgtcatga |
607 |
Q |
| |
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|||||| ||| |||||||||||||| || ||||| |||||||||||||||||||| | |||| | ||||| |||| ||| | || || || ||||| |
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| T |
24181229 |
gctcttgtggctcacggcggtggaaattccggtgacagccacaagcagcacatttgagggatctagggtca-ttgggattgagagatgatggtggcatga |
24181131 |
T |
|
| Q |
608 |
attcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattctttgta |
674 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
24181130 |
attcaccacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattctttgta |
24181064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 263
Target Start/End: Original strand, 14021410 - 14021574
Alignment:
| Q |
99 |
agtgtttttgttgttatgcatccaaaccttaagaacactacgatcaacaccaatttcattacaaaactcatgaacaaattcatcatcttttttctgcatc |
198 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| || || ||||| || | ||||| | |||||| || |
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| T |
14021410 |
agtgtgtttgttgttatgcatccaaaccttaagaacatgacgcttaacaccactttcattacagaattcttgaaccaaaccttcatcatgtttctgaatt |
14021509 |
T |
|
| Q |
199 |
ttccacccaactttctcagcaaatttcagcatcttatctttctgatcttgtgtaaactttgtcct |
263 |
Q |
| |
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|||| || | ||||||||| || | || ||||||||| ||||| || || || || |||||||| |
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| T |
14021510 |
ctccaacccaatttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
14021574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 14021837 - 14021876
Alignment:
| Q |
526 |
cggtggaagttacggtggcagccacaagcagcacatttta |
565 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
14021837 |
cggtggaagttacggtggcagttacaagcagcacatttta |
14021876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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