View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_10 (Length: 386)
Name: NF3536_high_10
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 2261232 - 2260875
Alignment:
| Q |
11 |
cataggattatgattatttatacaagaatacaccaactttcgttagaatttgctaagtttttcttttggtttaatttttggatatttgtccaatatatgt |
110 |
Q |
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| T |
2261232 |
cataggattatgattatttatacaagaatacaccaactttcgttagaatttgctaaacttttcttttggtttaatttttgggtatttgtccaatatatgt |
2261133 |
T |
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| Q |
111 |
gttgatgttagacataatttaccaatatacactaccagaacatcctaatcagatgtagtggtggaccatgctacgcttacccatggtggagacgaagctc |
210 |
Q |
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| T |
2261132 |
gttaatgttagacataatttactaatatacactaccagaacatcgtaatcagatgtagtggtggaccatgctacgcttaaccatggtggaggcgaagctc |
2261033 |
T |
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| Q |
211 |
tgccatggtccttgtgcaagacaaagtgaaatttgctagagaaagagcatggttggagagaggagagatttgattgtgtgtggttgtgactaatgaaatc |
310 |
Q |
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| T |
2261032 |
tgccatggtccttgtgcaagacaaagtgagatttgctagagaaagagcgtggttggagagacgagaga--tgattgtgtgtggttataactaatgaaatc |
2260935 |
T |
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| Q |
311 |
atatagatttatttaatctaatgatcaatcaaagtggtacaccgatgaaggacttgattg |
370 |
Q |
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| T |
2260934 |
atataaatttatttaattcaatgatcgatcaaaatggtataccggtgagggacttgattg |
2260875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 370
Target Start/End: Complemental strand, 27745746 - 27745578
Alignment:
| Q |
197 |
tggagacgaagctctgccatggtccttgtgcaagacaaagtgaaatttgctagagaaagagcatggttggagagaggagagatttgattgtgtgtggttg |
296 |
Q |
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| T |
27745746 |
tggagaccaagctctgtcatggtccttgtgcaacacaaagtgacatttgctagggctagagaaag-----agagaggagagatatgatcgagtgtggtta |
27745652 |
T |
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| Q |
297 |
tgactaatgaaatcatatagatttatttaatctaatgatcaatcaaagtggtacaccgatgaaggacttgattg |
370 |
Q |
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| T |
27745651 |
tgactattgaaatcatatagacttatttaatctaatgatcaattaaagtggtatatcggtgagggacttaattg |
27745578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 197 - 351
Target Start/End: Complemental strand, 32772290 - 32772141
Alignment:
| Q |
197 |
tggagacgaagctctgccatggtccttgtgcaagacaaagtgaaatttgctagagaaagagcatggttggagagaggagagatttgattgtgtgtggttg |
296 |
Q |
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| T |
32772290 |
tggagaccaagctctgccatggtccttgtgcaacacaaagtcagatttgctagggctagagaaag-----agagaggagagacatgatcgagtgtggtta |
32772196 |
T |
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| Q |
297 |
tgactaatgaaatcatatagatttatttaatctaatgatcaatcaaagtggtaca |
351 |
Q |
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| T |
32772195 |
tgactattgagatcatatagacttatttaatctaatggtcaattaaagtggtaca |
32772141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 27746028 - 27745928
Alignment:
| Q |
36 |
gaatacaccaactttcgttagaatttgctaagtttttcttttggtttaatttttggatatttgtccaatatatgtgttgatgttagacataatttaccaa |
135 |
Q |
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|||| |||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||| |
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| T |
27746028 |
gaatgcaccaactttcgttagaatttg-taggcatttcttttggtttaatttttgggtatttgtccaatatatgtgttattgtttgatataatttaccaa |
27745930 |
T |
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| Q |
136 |
ta |
137 |
Q |
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|| |
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|
| T |
27745929 |
ta |
27745928 |
T |
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