View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_12 (Length: 377)
Name: NF3536_high_12
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 63 - 352
Target Start/End: Original strand, 9823677 - 9823966
Alignment:
| Q |
63 |
ttagtagtaagaacaatctataaacaattttcatttttcttattgtaaaagaaatggtaaatgcaagtattagccaaatgtgttccaactgaaatatgtt |
162 |
Q |
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| T |
9823677 |
ttagtagtaagaaca-tctataaacaattttcatttttcttatagtaaaagaaatggtaaatgcaagtattagccaaatgtgttccaactgaaatatgtt |
9823775 |
T |
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| Q |
163 |
ctacatatacaacataaactaatatgtggattttctaaactgctac-gtaca---ttacaaacaaatggcttataattttgttagcttcggtaannnnnn |
258 |
Q |
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| T |
9823776 |
ctacatatacaacataaactaatatgtggattttctaaactgctacattacaattttacaaacaaatggcttataattttgttagcttcggtaa---ttt |
9823872 |
T |
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| Q |
259 |
nnnnncttccatctttcatataagcaactatgctagaaatgaagattacaccaagtgtgaaattgttgtgcatacttcttgtttcttattcgcc |
352 |
Q |
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| T |
9823873 |
tttttcttccatctttcatataagcaactatgctagaaatgaagattacaccaagtgtgaaattgttgtgcatacttcttgtttcttattcgcc |
9823966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 9815987 - 9816027
Alignment:
| Q |
14 |
attcgtaatgagtatttatgttattccgaattctatcatag |
54 |
Q |
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| T |
9815987 |
attcgtaatgagtatttatgttattccgaattccatcatag |
9816027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 9707097 - 9707154
Alignment:
| Q |
118 |
ggtaaatgcaagtattagccaaatgtgttccaactgaaatatgttctacatatacaaca |
176 |
Q |
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| T |
9707097 |
ggtaaatgtaggtattagtcaa-tgtgttccaactgaaaaatgttctgcatatacaaca |
9707154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 6411765 - 6411717
Alignment:
| Q |
329 |
catacttcttgtttcttattcgcctcccatcttaaaaaattacagactt |
377 |
Q |
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| T |
6411765 |
catacttcttgtttcttatttgccacccatcttaaaaaattacagactt |
6411717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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