View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_17 (Length: 306)
Name: NF3536_high_17
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 32746840 - 32747063
Alignment:
| Q |
11 |
caaagggagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtactcggaggtttgt |
110 |
Q |
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| T |
32746840 |
caaagagagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggtttgt |
32746939 |
T |
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| Q |
111 |
caagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagatctgccaatattttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32746940 |
caagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagacctgccaatattttt |
32747039 |
T |
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| Q |
211 |
tgttttcagtgctacttaatgctt |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
32747040 |
tgttttcagtgctacttaatgctt |
32747063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 4913829 - 4914040
Alignment:
| Q |
11 |
caaagggagatagatattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtactcggaggtttgt |
110 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
4913829 |
caaagagagatagatattcaagagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggcttgt |
4913928 |
T |
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| Q |
111 |
caagttgctaaggcaatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagatctgccaatatt-tt |
209 |
Q |
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|||||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||| |||| | ||| ||||||| || |
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| T |
4913929 |
caagtttctaaggcattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcctgtcaatattatt |
4914028 |
T |
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| Q |
210 |
ttgttttcagtg |
221 |
Q |
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|||||||||||| |
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| T |
4914029 |
ttgttttcagtg |
4914040 |
T |
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