View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_19 (Length: 277)
Name: NF3536_high_19
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_19 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 11578 - 11339
Alignment:
| Q |
7 |
catgtccaagaatatatat-tttttatacatattcaatgtcaaaatattagcatgggaacctgtatccatggcaaaatccgctggaaacaagtttcctgc |
105 |
Q |
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| T |
11578 |
catgtccaattatatatatatttttatacatattcaatgttaaaatattagcatgggaacatgtatccatggcaaaatccgctggaaacaagtttcctgc |
11479 |
T |
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| Q |
106 |
ggaatattcattgttatccgcaggaaataccccaggaaaaacgtgagtttctagtagtgtttatattagcatatggaaatggaaaacctatgcttccatc |
205 |
Q |
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| T |
11478 |
ggaatatacattgttatccgcaggaaatgccccaggaaaatcgtgagtttctagtactgtttatattagcatatggaaatggaaaacctatgcttccatc |
11379 |
T |
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| Q |
206 |
tttctcacttcaggtcagatttttactgtccacaccatac |
245 |
Q |
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| T |
11378 |
tttctcacttcaggtcagatttttactgtccacaccatac |
11339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 39452094 - 39452333
Alignment:
| Q |
7 |
catgtccaagaatatatatttt-ttatacatattcaatgtcaaaatattagcatgggaacctgtatccatggcaaaatccgctggaaacaagtttcctgc |
105 |
Q |
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| T |
39452094 |
catgtccaattatatatatttttttatacatattcaatgttaaaatattagcatgggaacatgtatccatggcaaaatccgctggaaacaagtttcctgc |
39452193 |
T |
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| Q |
106 |
ggaatattcattgttatccgcaggaaataccccaggaaaaacgtgagtttctagtagtgtttatattagcatatggaaatggaaaacctatgcttccatc |
205 |
Q |
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| T |
39452194 |
ggaatatacattgttatccgcaggaaatgccccaggaaaatcgtgagtttctagtactgtttatattagcatatggaaatggaaaacctatgcttccatc |
39452293 |
T |
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| Q |
206 |
tttctcacttcaggtcagatttttactgtccacaccatac |
245 |
Q |
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| T |
39452294 |
tttctcacttcaggtcagatttttactgtccacaccatac |
39452333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 39468395 - 39468349
Alignment:
| Q |
165 |
tttatattagcatatggaaatggaaaacctatgcttccatctttctcac |
213 |
Q |
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| T |
39468395 |
tttatattagcat--ggaaattgaaaacctatgcttccttctttctcac |
39468349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 1756817 - 1756924
Alignment:
| Q |
57 |
catgggaacctgtatccatggcaaaatccgctggaaacaagtttcctgcggaatattcattgttatccgcaggaaataccccaggaaaaacgtgagtttc |
156 |
Q |
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| T |
1756817 |
catgggaacctaaatccatggcaaattccgcaggaaacatgtttcctgcggaactttctctattatcagcagataatcccccaggaaaatcgagagtttc |
1756916 |
T |
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| Q |
157 |
tagtagtg |
164 |
Q |
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| T |
1756917 |
tagtagtg |
1756924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 26641170 - 26641252
Alignment:
| Q |
79 |
aaaatccgctggaaacaagtttcctgcggaatattcattgttatccgcaggaaataccccaggaaaaacgtgagtttctagta |
161 |
Q |
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| T |
26641170 |
aaaatccgctggaaacaggtttcctgcggaaatttcagtataatccgtaggaaattccggaggaaaatcgggagtttctagta |
26641252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 17898756 - 17898711
Alignment:
| Q |
70 |
atccatggcaaaatccgctggaaacaagtttcctgcggaatattca |
115 |
Q |
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| T |
17898756 |
atccttggcaaaatccgcaggaaacacgtttcctgcggattattca |
17898711 |
T |
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