View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_22 (Length: 251)
Name: NF3536_high_22
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_22 |
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| [»] scaffold0054 (5 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 37798 - 38030
Alignment:
| Q |
19 |
agcttgaaacacaacttctaagaaatttatttgaggtgtacacatagttgatttattctctaaatgaactcaccattgcatttgttgcaggcagtgattt |
118 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |
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| T |
37798 |
agctagaaatacaacttctaagaaatttatttgaggtatacacatagttgatttattctctagatgaactcaccattgcatttgttgcagggagtggttt |
37897 |
T |
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| Q |
119 |
cttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactgaccttctcaatctcctttactatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37898 |
cttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactgaccttctcaatctccttttctatttt |
37997 |
T |
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| Q |
219 |
acttttcggatatattttcgatctcccaatagt |
251 |
Q |
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| T |
37998 |
acttttcggatatattttcgatctcccaatagt |
38030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 49523 - 49639
Alignment:
| Q |
135 |
agacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactgaccttctcaatctcctttactattttacttttcggatatatt |
234 |
Q |
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||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||| |
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| T |
49523 |
agacgaagagagtcgaactttgcttgtatattgcaatctgaaccctaagtaaccaatgaccttctcaatctccttttctattttaccttttggaaatatt |
49622 |
T |
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| Q |
235 |
ttcgatctcccaatagt |
251 |
Q |
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| T |
49623 |
ttcgatctcccaatagt |
49639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 40812 - 40974
Alignment:
| Q |
89 |
caccattgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaacc |
188 |
Q |
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| T |
40812 |
cacctttgcatttgttgcagccgttgatttgttctccatcgacacgacacgaagagaatcgaactttgcttgcaaattgcaatcctaaccctaagtaacc |
40911 |
T |
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| Q |
189 |
actgaccttctcaatctcctttactattttacttttcggatatattttcgatctcccaatagt |
251 |
Q |
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| T |
40912 |
tctaaccttctcaatctccttttcttttttaatttttgtaaatgttttcaatctcctaatagt |
40974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 34455 - 34572
Alignment:
| Q |
89 |
caccattgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaacc |
188 |
Q |
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|||| ||||||||||||||| | |||||||||||||||| |||| ||| ||||||| | |||||||||||||||||| |||||||||||| |||||||| |
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| T |
34455 |
cacctttgcatttgttgcagccgctgatttcttcttcatcgacacgagatgaagagaatcgaactttgcttgcaaatttcaatcctaacccaaagtaacc |
34554 |
T |
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| Q |
189 |
actgaccttctcaatctc |
206 |
Q |
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| T |
34555 |
actgaccttctcaatctc |
34572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 49430 - 49520
Alignment:
| Q |
14 |
agacgagcttgaaacacaacttctaagaaatttatttgaggtgtacacatagttgatttattctctaaatgaactcaccattgcatttgtt |
104 |
Q |
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| T |
49430 |
agacgagcttgaaacacaacttctaagaaatttatttgaggtatacacatagttgacttcttctctagatgagctcacctttgcatttgtt |
49520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 13339124 - 13338974
Alignment:
| Q |
94 |
ttgcatttgttgcaggcagtgatttcttcttcatcaacacaagacgaagagagtagaactttgcttgcaaattgcaatcctaaccctaagtaaccactga |
193 |
Q |
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||||| ||||||||| | ||||||||||| |||| |||| ||||||||||||| | | ||| ||||||||||||||| ||||||||||||||||||| | |
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| T |
13339124 |
ttgcaattgttgcagcctctgatttcttctccatcgacacgagacgaagagagtcggattttacttgcaaattgcaattctaaccctaagtaaccactaa |
13339025 |
T |
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| Q |
194 |
ccttctcaatctcctttactattttacttttcggatatattttcgatctcc |
244 |
Q |
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| T |
13339024 |
ccttctcaatctccttttcttttttaatgtttggaaatattttcaatctcc |
13338974 |
T |
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