View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_28 (Length: 247)
Name: NF3536_high_28
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9617895 - 9617669
Alignment:
| Q |
1 |
cttagatgttgcacattagaaactgctctgagtggaattacctcgaataaatgaatactagctttgatcaacttcggtaggggtttagagtaccctcctc |
100 |
Q |
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| T |
9617895 |
cttagatgttgcacattagaaactgctctgagtggaa---cctcgaataaatgaatactagctttgatcaacttcggtaggggtttagagtaccctcctc |
9617799 |
T |
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| Q |
101 |
cagctgtaatgtttccggcacttgctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatc |
200 |
Q |
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| T |
9617798 |
cagctataatgcttccggcactttctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttatttaaatcctccatatc |
9617699 |
T |
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| Q |
201 |
atcgaaacgaacatccatcagatccagggt |
230 |
Q |
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| T |
9617698 |
atcgaaacggacattcatcatatccagggt |
9617669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 19805838 - 19805768
Alignment:
| Q |
129 |
tttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatat |
199 |
Q |
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| T |
19805838 |
tttaacatatctagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcctcgatat |
19805768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 32242700 - 32242787
Alignment:
| Q |
133 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatccatca |
220 |
Q |
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| T |
32242700 |
acatatgcaattttcaaatcctctaacatgggacacccagatataagtttctttaaatcttccatatcatccaaatgaacatcaatca |
32242787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 32225231 - 32225439
Alignment:
| Q |
9 |
ttgcacattagaaactgctctgagtggaattacctcgaataaatgaatactagctttgatcaacttcggtaggggtttagagtaccctcctccagctgta |
108 |
Q |
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| T |
32225231 |
ttgcacattagaaactactctgagcggaa---catcgaataaacggatattagctttaatcaacttggataagggtttagagtac---cctccagctgta |
32225324 |
T |
|
| Q |
109 |
a---tgtttccggcacttgctgctttaacatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcga |
205 |
Q |
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| T |
32225325 |
aactcgaccccgacacttgatg---tgacatatgatgttttcaaatcctctaatatgggaaactcagatataagtttctttaaatcctcgatatcatcca |
32225421 |
T |
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| Q |
206 |
aacgaacatccatcagat |
223 |
Q |
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| T |
32225422 |
aatgaacgtcaatcagat |
32225439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 32225949 - 32225871
Alignment:
| Q |
146 |
tcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcat-cgaaacgaacatccatcagat |
223 |
Q |
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| T |
32225949 |
tcaaatcctctaatatgggacacccagatataagtttctttaaatcctcgatataatccaaaacgaacaacaatcagat |
32225871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 16259105 - 16259187
Alignment:
| Q |
133 |
acatatgaaattgtcaaattctctaatatgggacacccatagataagtttcttgaaatcctccatatcatcgaaacgaacatc |
215 |
Q |
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| T |
16259105 |
acatatgcagttttcaaatcctctaacatgggactcccggatataagtttctttaaatcctcgatatcatcaaaacgaacatc |
16259187 |
T |
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