View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_high_35 (Length: 238)

Name: NF3536_high_35
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_high_35
NF3536_high_35
[»] chr2 (4 HSPs)
chr2 (1-93)||(35919906-35919998)
chr2 (7-70)||(35556004-35556066)
chr2 (1-62)||(35891458-35891519)
chr2 (37-79)||(35546438-35546480)
[»] chr3 (1 HSPs)
chr3 (10-45)||(29624270-29624305)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 35919906 - 35919998
Alignment:
Q  1 caaataatcaggacatgaagtctccttctgtagaagacacttgaaattaagtgtctaattttcaataaaaccgaaaatttctatttggtatag 93  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35919906 caaataatcaggacatgaagtctccttctgtagaagacatttgaaattaagtgtctaattttcaataaaaccgaaagtttctatttggtatag 35919998  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 35556066 - 35556004
Alignment:
Q  7 atcaggacatgaagtctccttctgtagaagacacttgaaattaagtgtctaattttcaataaaa 70  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35556066 atcaggacatgaagtctcctt-tgtagaagacacttgaaattaagtgtctaattttcaataaaa 35556004  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35891458 - 35891519
Alignment:
Q  1 caaataatcaggacatgaagtctccttctgtagaagacacttgaaattaagtgtctaatttt 62  Q
    ||||| || ||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  35891458 caaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaatttt 35891519  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 35546480 - 35546438
Alignment:
Q  37 acacttgaaattaagtgtctaattttcaataaaaccgaaaatt 79  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  35546480 acacttgaaattaagtatctaattttcaacaaaactgaaaatt 35546438  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 29624270 - 29624305
Alignment:
Q  10 aggacatgaagtctccttctgtagaagacacttgaa 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29624270 aggacatgaagtctccttctgtagaggacacttgaa 29624305  T

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