View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3536_high_4 (Length: 502)
Name: NF3536_high_4
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4547571 - 4547305
Alignment:
| Q |
1 |
atattatctggtattataaataaaaattgattggaaggatgaatagctgatgaagaatcttgaatttaaaggaagcagaatgattcacatttgacatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4547571 |
atattatctggtattataaataaaaattgattggaaggatgaatagctgatgaagaatcttgaatttaaaggaagcagaatgattcacatttgacatttc |
4547472 |
T |
|
| Q |
101 |
taaaactaggcatggctccttagctcttaccccaaccctgttaaggttggaactcattggtaggaagtgtttggatcaacaagtaaattaagattccgaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4547471 |
taaaactaggcacggctccttagctattaccccaaccctgttaaggttggaactcattggtaggaagtgtttggatcaacaagtaaattaagattcagaa |
4547372 |
T |
|
| Q |
201 |
gctgtttgcaaaattaatgaactaaaaatctagatcgccaaaagattagtatacgaaatctctatct |
267 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4547371 |
gctgtttgcaaaattaatgaaataaaaatctagatcgccaaaagattagtatacgacatctctatct |
4547305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 361 - 498
Target Start/End: Complemental strand, 4547129 - 4546992
Alignment:
| Q |
361 |
acttggactggacaaatttaatagattagtggtagataataaaaagtaagtaacagtacaccttagtatgaaagggttcgagaagagtaacaacagtaac |
460 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4547129 |
acttggactggagaaatttaatagattagtggtagataataaaaagtaagtagcagtagaccttagtatgaaagggttcgagaagagtaacaacagtaac |
4547030 |
T |
|
| Q |
461 |
aagagaagggtctaatccaatctcctcctttgcttctc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4547029 |
aagagaagggtctaatccaatctcctcctttgcttctc |
4546992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 4547188 - 4547158
Alignment:
| Q |
299 |
tcgaatgtgttttccctttgttggtttggtc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4547188 |
tcgaatgtgttttccctttgttggtttggtc |
4547158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University