View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_42 (Length: 213)
Name: NF3536_high_42
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 4452261 - 4452064
Alignment:
| Q |
1 |
agtttgaagcttgaagctacaaaaatgactattgatgaagaaagtttgttgaattctagaaatgaagaagagggtcctcccgattctgttttgaatgata |
100 |
Q |
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| T |
4452261 |
agtttgaagcttgaagctacaaaaatgactattgatgaagaaagtttgttgaattctagagatgaagaagagggtcctcccgattctgttctgaatgata |
4452162 |
T |
|
| Q |
101 |
tacattctaaacctcgtagaattgctctttttgttgaaccttcacctttttcgtgagtttctttcattcaatgtagaatctttttcaatattgaaacc |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4452161 |
tacattctaaacctcgtagaattgctctttttgtcgaaccttcacctttttcgtgagtttctttcattcaatgtagaatctttttcaatattgaaacc |
4452064 |
T |
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