View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_44 (Length: 202)
Name: NF3536_high_44
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 35919626 - 35919434
Alignment:
| Q |
1 |
tataagtctcacatgaatttcagttgctagtaaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35919626 |
tataagtctcacatgaatttcagttgctagtaaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttacctt |
35919527 |
T |
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| Q |
101 |
aacaggtccggctgctttgagggaattcacaacagtacttccgaaagtaattcccttattatcggtcaatataactccacatcttgcctttgc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35919526 |
aacaggtccggctgctttgagggaattcacaacagtacttccgaaagtaattcccttattatcggtcaatataactccacatcttgcctttgc |
35919434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 35556393 - 35556518
Alignment:
| Q |
30 |
gtaaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttaccttaacaggtccggctgctttgagggaattca |
129 |
Q |
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||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||||||| |
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| T |
35556393 |
gtaaagaaaataaagcaaagattgttaataa----cactaatcattccataaactatgatttgcttacctcaataggtcctgcagctttgagggaattca |
35556488 |
T |
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| Q |
130 |
caacagtacttccgaaagtaattcccttat |
159 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
35556489 |
cagcagtacttccgaaagtaattcccttat |
35556518 |
T |
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