View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_6 (Length: 476)
Name: NF3536_high_6
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 25424095 - 25423640
Alignment:
| Q |
18 |
atataaatcttatgcggagatatgcaaatcatcactaattccccctgctggaatcatggaattttcaaacatgtgcagagtgttaaatgatcaggtatct |
117 |
Q |
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| T |
25424095 |
atataaatcttatgcggagatatgcaaatcatcactaattccccctgctggaatcatggaattttcaaacatgtgcagagtgttaaatgaccaggtatct |
25423996 |
T |
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| Q |
118 |
gtcatgaatttcttgatatagtttttgccactaaataatttttatattagagggctttcttgaggcaaagtggtgatcagtaatataatgata--cataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25423995 |
gtcatgaatttcttgatatagtttttgccactaaataatttttatattagagtgctttcttgaggcaaagtggtgatcagtaatataatgatatacataa |
25423896 |
T |
|
| Q |
216 |
attattactgcagggccttattaaactaggacaatcccgagatgataaattgagaagagtgacaccaaaactagatgaaggtgatattacttttgcgttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25423895 |
attattactgcagggccttattaaactaggacaatccagagatgataaattgagaagagtgacaccaaaactagatgaaggtgatattacttttgcgttg |
25423796 |
T |
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| Q |
316 |
caggtaatttttcattcccttgagccactgtatcatttgatttttatactaccttagattattgtgcttgtattggtagttactcatgagttttgacgcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25423795 |
caggtaatttttcattcccttgagccactgtatcatttgatttttatactaccttagattattgtgcttgtattggtagttactcataagttttgacgcc |
25423696 |
T |
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| Q |
416 |
tgaatgaatttcattgcagggaatccgcttttttcgaaattgtcttctgtgctcct |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
25423695 |
tgaatgaatttcattgcagggaatccgcttttttcgaaattgtcttcagtgatcct |
25423640 |
T |
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