View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3536_high_7 (Length: 453)

Name: NF3536_high_7
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3536_high_7
NF3536_high_7
[»] chr3 (8 HSPs)
chr3 (1-156)||(15777337-15777491)
chr3 (1-88)||(3290643-3290730)
chr3 (65-143)||(49969012-49969091)
chr3 (7-143)||(9733626-9733763)
chr3 (173-230)||(16216373-16216430)
chr3 (1-72)||(3593099-3593170)
chr3 (181-230)||(20905986-20906035)
chr3 (180-212)||(13921167-13921199)
[»] chr4 (8 HSPs)
chr4 (1-139)||(23974078-23974220)
chr4 (69-156)||(15239974-15240062)
chr4 (67-130)||(46224395-46224458)
chr4 (21-150)||(11153758-11153891)
chr4 (47-156)||(13884302-13884413)
chr4 (1-73)||(15706707-15706780)
chr4 (1-73)||(25126231-25126304)
chr4 (3-51)||(19611919-19611967)
[»] chr6 (5 HSPs)
chr6 (7-150)||(19769031-19769179)
chr6 (69-143)||(3851171-3851245)
chr6 (65-127)||(19400930-19400993)
chr6 (3-51)||(12987076-12987124)
chr6 (173-221)||(26278853-26278901)
[»] chr7 (5 HSPs)
chr7 (7-156)||(11508712-11508863)
chr7 (7-150)||(18147605-18147753)
chr7 (77-143)||(3387273-3387340)
chr7 (21-89)||(32945355-32945425)
chr7 (3-85)||(33721244-33721329)
[»] scaffold0009 (1 HSPs)
scaffold0009 (65-141)||(160380-160457)
[»] scaffold0281 (1 HSPs)
scaffold0281 (1-73)||(1870-1942)
[»] chr5 (5 HSPs)
chr5 (22-150)||(39176386-39176519)
chr5 (173-212)||(28710634-28710673)
chr5 (70-131)||(24068061-24068123)
chr5 (173-211)||(24186501-24186539)
chr5 (21-76)||(39435973-39436029)
[»] chr8 (3 HSPs)
chr8 (1-86)||(40391386-40391472)
chr8 (40-131)||(9883599-9883692)
chr8 (89-129)||(9883280-9883320)
[»] chr1 (3 HSPs)
chr1 (54-130)||(91082-91160)
chr1 (21-150)||(12786177-12786315)
chr1 (93-141)||(41136799-41136847)
[»] chr2 (6 HSPs)
chr2 (1-81)||(32623597-32623677)
chr2 (65-199)||(34491398-34491530)
chr2 (6-86)||(27386938-27387020)
chr2 (1-69)||(16093554-16093622)
chr2 (173-212)||(6880726-6880765)
chr2 (173-212)||(6875210-6875249)
[»] scaffold0461 (1 HSPs)
scaffold0461 (70-143)||(12303-12377)
[»] scaffold0019 (1 HSPs)
scaffold0019 (23-73)||(182968-183019)
[»] scaffold0120 (1 HSPs)
scaffold0120 (70-131)||(29143-29205)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 15777337 - 15777491
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggggagttttattcatcat-aggattgtgta 99  Q
    ||||||||||||||||| |||||||||||||||||||  || | |||| || |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  15777337 gaatagcgagaagaacctagagagagatttcaccgtaggaatttatcacttttgcaaactagaggtaagggggagttttattcatcataagggttgtgta 15777436  T
Q  100 ctcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 156  Q
    || |||||| ||||||| ||||||||||||| | | ||||||| |||| ||||||||    
T  15777437 cttatgtgggtagtgaa-ggttgttaattttcaatgttttctt-attcctttgatga 15777491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3290730 - 3290643
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttattcatcat 88  Q
    ||||||||||||||||| |||||| ||||| ||||||  ||||||||||||  || |||||||| |||||||||||| |||||||||||    
T  3290730 gaatagcgagaagaacctagagagggatttaaccgtaggaaatcatcaatttcgcaaaactaga-gtaagggggagtcttattcatcat 3290643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 49969012 - 49969091
Alignment:
Q  65 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 143  Q
    ||||||||| ||||||||||||||| || |||||||||| ||||| ||||||| ||||||||||||| ||  ||||||||    
T  49969012 gtaagggggggttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaattttcatcgttttctta 49969091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 9733626 - 9733763
Alignment:
Q  7 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggg-ggagttttattcatcata-ggattgtgtactca 103  Q
    ||||||||| | ||||||||||||||| |||  || ||||||| || | | ||||||   |||||| ||||||||||||||  || || |||||||||||    
T  9733626 cgagaagaatctagagagagatttcacagtaggaattcatcaaattcttcgaactag---taagggtggagttttattcattgtaagggttgtgtactca 9733722  T
Q  104 tgtggctagtgaagggttgttaattttta-ttattttctta 143  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  9733723 tgtggatagtgaagggttgttaattttcatttattttctta 9733763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 16216430 - 16216373
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 230  Q
    |||| |||||||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  16216430 tgttactgtaattatatgtttgattttcgtttcagaattgtgatgttttcatgttaaa 16216373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3593170 - 3593099
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggg 72  Q
    |||||||||||| |||| |  |||||||||| |||||  ||||||||||||  |||||||||||||||||||    
T  3593170 gaatagcgagaataacctatggagagatttctccgtaggaaatcatcaattcggcaaactagaggtaagggg 3593099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 20906035 - 20905986
Alignment:
Q  181 taattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 230  Q
    |||||||||||||||||| ||||| ||||||| ||| |||||| ||||||    
T  20906035 taattatatgtttgatttccgtttttgaattgtgatgttttcaggttaaa 20905986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 13921199 - 13921167
Alignment:
Q  180 gtaattatatgtttgattttcgtttctgaattg 212  Q
    |||||||||||||||||||| ||||||||||||    
T  13921199 gtaattatatgtttgatttttgtttctgaattg 13921167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 23974220 - 23974078
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaa--gggggag-ttttattcatcat-aggattgt 96  Q
    ||||||||||||||||| ||||| |||||||||||||  |||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||  |||    
T  23974220 gaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatcaattctgcaaactagaggtaatggggggagtttttattcatcataagggctgt 23974121  T
Q  97 gtactcatgtggctagtgaagggttgttaatttttattatttt 139  Q
    ||| |||||||| |||||||||||||||||||||  |||||||    
T  23974120 gtattcatgtggatagtgaagggttgttaattttctttatttt 23974078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 15239974 - 15240062
Alignment:
Q  69 gggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 156  Q
    ||||||||||||||||||||| || |||||| ||||||||  |||||||||||||||||||| | || |||||||||||||||||||||    
T  15239974 gggggagttttattcatcataagggttgtgtgctcatgtgtgtagtgaagggttgttaatttctgttgttttcttaattcttttgatga 15240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 46224395 - 46224458
Alignment:
Q  67 aagggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttt 130  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||    
T  46224395 aagggggagttttattcattataggtttgtttactcatgtgggtagtgaagggttgttaatttt 46224458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 11153891 - 11153758
Alignment:
Q  21 agagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa-gggggagttt-tattcatcata-ggattgtgtactcatgtggctagtgaa 116  Q
    |||||||||||||||||  || ||||||| || | | |||||||||||| |||||||| | ||||||||||| || |||||||||||||||| |||||||    
T  11153891 agagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgtgtactcatgtgggtagtgaa 11153792  T
Q  117 gggttgttaatttttattattttcttaattcttt 150  Q
       ||||||||||||||| |||||||||| ||||    
T  11153791 aaattgttaatttttattgttttcttaatccttt 11153758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 13884302 - 13884413
Alignment:
Q  47 caattatgcaaactagaggtaagggggagtttt--attcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 143  Q
    ||||| ||| |||||||| ||||||||| || |  |||||||||| |||||||||| | |||||| |||||||| || ||||||||| |||||||||||     
T  13884302 caattttgcgaactagagataagggggaattctctattcatcataaggattgtgtatttatgtggatagtgaagagtcgttaattttcattattttctt- 13884400  T
Q  144 attcttttgatga 156  Q
    |||| ||||||||    
T  13884401 attcctttgatga 13884413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15706780 - 15706707
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaaggggg 73  Q
    ||||||||||||||| | | || ||||||||| ||||| ||||||||||||  || ||||||||||||| ||||    
T  15706780 gaatagcgagaagaatctaaagggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggg 15706707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25126231 - 25126304
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaaggggg 73  Q
    ||||||||||||||||| ||||||| |||| | ||||  ||||||||||||  || |||||||||||| |||||    
T  25126231 gaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatggggg 25126304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 19611919 - 19611967
Alignment:
Q  3 atagcgagaagaacccagagagagatttcaccgtaacaaatcatcaatt 51  Q
    ||||||||||||||| |||||||||||||| ||||   |||||||||||    
T  19611919 atagcgagaagaacctagagagagatttcatcgtagggaatcatcaatt 19611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 19769031 - 19769179
Alignment:
Q  7 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtact 101  Q
    ||||||||| | |||||||||||||||||||  || ||||||| || | | ||||||||||||  |||||||| | ||||||||||| || |||||||||    
T  19769031 cgagaagaatctagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgtgtact 19769130  T
Q  102 catgtggctagtgaagggttgttaatttttattattttcttaattcttt 150  Q
    ||||||| ||||||| | |||||||||||||||||||||||||| ||||    
T  19769131 catgtgggtagtgaaagattgttaatttttattattttcttaatccttt 19769179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 3851171 - 3851245
Alignment:
Q  69 gggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 143  Q
    |||| |||||||||||||||| | |||||||||||||||| ||||||| ||||||||| ||| ||||||| ||||    
T  3851171 ggggaagttttattcatcataaggttgtgtactcatgtgggtagtgaaaggttgttaaatttcattatttcctta 3851245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 19400993 - 19400930
Alignment:
Q  65 gtaagggggagttttattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaat 127  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||||    
T  19400993 gtaagggggtgttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaat 19400930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 12987076 - 12987124
Alignment:
Q  3 atagcgagaagaacccagagagagatttcaccgtaacaaatcatcaatt 51  Q
    ||||||||||||||| |||||||||||||||||||   |||||||||||    
T  12987076 atagcgagaagaacctagagagagatttcaccgtatggaatcatcaatt 12987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 26278901 - 26278853
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatatttt 221  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  26278901 tgttgctgtaattatatgtttgatttttgtttttgaattgtgatgtttt 26278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 11508712 - 11508863
Alignment:
Q  7 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggggg-agttttattcatcata-ggattgtgtactca 103  Q
    ||||||||| | |||||||||||| || |||  || ||||||| || | | ||||||||||||||||| ||||||||||||  || || ||||||| |||    
T  11508712 cgagaagaatctagagagagattttacagtagtaattcatcaaattctccgaactagaggtaaggggggagttttattcattgtaagggttgtgtaatca 11508811  T
Q  104 tgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 156  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  11508812 tgtggatagtgaagggttgttaattttcattattttctt-attcctttgatga 11508863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 18147605 - 18147753
Alignment:
Q  7 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtact 101  Q
    ||||||||| | ||||||||||||| |||||  || ||||||| || | | ||||||||||||  |||||||| | ||||||||||| || |||||||||    
T  18147605 cgagaagaatctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttgtgtact 18147704  T
Q  102 catgtggctagtgaagggttgttaatttttattattttcttaattcttt 150  Q
    ||||||| |||||||   ||||||||||||||| |||||||||| ||||    
T  18147705 catgtgggtagtgaaaaattgttaatttttattgttttcttaatccttt 18147753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 3387340 - 3387273
Alignment:
Q  77 tttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 143  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  3387340 tttattcatcataagggttgtgtactcatgtgggtagtgaagggttgttaaatttgattatttcctta 3387273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 32945425 - 32945355
Alignment:
Q  21 agagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaa-gggggagttttattcatcata 89  Q
    |||||||||||| ||||  ||||||||||||  || ||||||||||||| ||||||||| |||||||||||    
T  32945425 agagagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagttatattcatcata 32945355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 33721329 - 33721244
Alignment:
Q  3 atagcgagaagaacccagagagagatttc-accgtaacaaatcatcaattatgc-aaactagaggtaagggggagt-tttattcat 85  Q
    ||||||||||||||| ||||||||||||| || |||  || ||||| ||| ||| ||||||||| ||||||||||| |||||||||    
T  33721329 atagcgagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaactagagataagggggagtgtttattcat 33721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 160457 - 160380
Alignment:
Q  65 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttct 141  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  160457 gtaagggggagttttattcatcataagggttgtttactcatgtgggtagtgaagggttgttaattttcattgttttct 160380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1942 - 1870
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaaggggg 73  Q
    ||||||||||||||||| | |||||||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  1942 gaatagcgagaagaacctacagagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 39176519 - 39176386
Alignment:
Q  22 gagagatttcaccgtaacaaatcatcaattatgcaaa-ctagaggtaaggggg--agttt-tattcatcata-ggattgtgtactcatgtggctagtgaa 116  Q
    ||||||||||||| ||  ||||||||||||  ||||| |||||||||| ||||  ||| | ||||||||||| || |||||||||||||||| |||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttgtgtactcatgtgggtagtgaa 39176420  T
Q  117 gggttgttaatttttattattttcttaattcttt 150  Q
     | ||||||||||||||| |||||||||| ||||    
T  39176419 agattgttaatttttattgttttcttaatccttt 39176386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 28710634 - 28710673
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaattg 212  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  28710634 tgttgttgtaattatatgtttgattttcgtttctgaattg 28710673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 24068123 - 24068061
Alignment:
Q  70 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 131  Q
    ||||||||| |||||||||| || |||||||| | ||||| ||||||||||||||||||||||    
T  24068123 ggggagtttcattcatcataagggttgtgtacgcgtgtgggtagtgaagggttgttaattttt 24068061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 24186539 - 24186501
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaatt 211  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24186539 tgttgccgtaattatatgtttgattttcgtttctgaatt 24186501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 39435973 - 39436029
Alignment:
Q  21 agagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagt 76  Q
    |||||||||||||||||  ||||||||||||   | |||||||||||||||||||||    
T  39435973 agagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagggggagt 39436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40391472 - 40391386
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaa-ctagaggtaagggggagttttattcatc 86  Q
    ||||||||||||||||| | |||||||||||| | ||  ||| ||||||||  ||||| ||||||||||||||||||||||||||||    
T  40391472 gaatagcgagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagttttattcatc 40391386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 9883692 - 9883599
Alignment:
Q  40 aaatcatcaattatgcaaactagaggtaagggggagttt-tattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaattttt 131  Q
    |||||||||||| | ||||||||||||| |||||||||| |||| | ||| ||| ||||||| |||||||| | | ||||| ||||||||||||    
T  9883692 aaatcatcaattctacaaactagaggtatgggggagtttctatttaccataagggttgtgtaatcatgtggatggcgaaggattgttaattttt 9883599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 9883320 - 9883280
Alignment:
Q  89 aggattgtgtactcatgtggctagtgaagggttgttaattt 129  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  9883320 aggattgtgtactcatgtgggtagttaagggttgttaattt 9883280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 91160 - 91082
Alignment:
Q  54 gcaaactagaggtaaggg-ggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttt 130  Q
    |||||||||||||||||| ||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||    
T  91160 gcaaactagaggtaagggaggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaatttt 91082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 12786315 - 12786177
Alignment:
Q  21 agagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtactcatgtggct----a 111  Q
    |||||||||||||||||  || ||||||| || | ||||||||||||||  |||||||| | ||||||||||| || |||||||||||||||| |    |    
T  12786315 agagagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttgtgtactcatgtgggtgggta 12786216  T
Q  112 gtgaagggttgttaatttttattattttcttaattcttt 150  Q
    ||||| | ||||||||||||||| |||||||||| ||||    
T  12786215 gtgaaagattgttaatttttattgttttcttaatccttt 12786177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 41136799 - 41136847
Alignment:
Q  93 ttgtgtactcatgtggctagtgaagggttgttaatttttattattttct 141  Q
    |||| ||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  41136799 ttgtatactcatgtgggtagtgaatggttgttaattttcattgttttct 41136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32623597 - 32623677
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttat 81  Q
    ||||| ||||||||| | |||||||||||||||||||  |||||||||||| ||| ||||||||||| ||||||||||||||    
T  32623597 gaataacgagaagaatctagagagagatttcaccgtagaaaatcatcaattttgcaaaactagaggt-agggggagttttat 32623677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 34491398 - 34491530
Alignment:
Q  65 gtaagggggagttttattcatcatagga-ttgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatgagtatgtg 163  Q
    ||||||| ||||||||||||||||| || ||  |||||||||||| | ||||||| |||||||||||| || ||||||| |||| |||||| | | | ||    
T  34491398 gtaagggagagttttattcatcataagagttacgtactcatgtgggttgtgaaggattgttaatttttgttgttttctt-attcctttgataattttatg 34491496  T
Q  164 tttaattcgtgttgctgtaattatatgtttgatttt 199  Q
    || |||||   ||||| |||||||||||||||||||    
T  34491497 ttaaattc--attgctataattatatgtttgatttt 34491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 27386938 - 27387020
Alignment:
Q  6 gcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaag-ggggagttttattcatc 86  Q
    |||||||||||| |||||||||||||||||||  ||||||| ||||  || |||||||||||||| |||| ||||||||||||    
T  27386938 gcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaagaggggggttttattcatc 27387020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16093622 - 16093554
Alignment:
Q  1 gaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaag 69  Q
    ||||||||||| ||||| ||||||||||||||| |||  || |||||| || |||||||||||||||||    
T  16093622 gaatagcgagaggaacctagagagagatttcactgtagaaattcatcacttttgcaaactagaggtaag 16093554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 6880726 - 6880765
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaattg 212  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6880726 tgttgccgtaattatatgtttgattttcgtttctgaattg 6880765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 6875210 - 6875249
Alignment:
Q  173 tgttgctgtaattatatgtttgattttcgtttctgaattg 212  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  6875210 tgttgccgcaattatatgtttgattttcgtttctgaattg 6875249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 12377 - 12303
Alignment:
Q  70 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 143  Q
    ||||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  12377 ggggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaattttggttattttctta 12303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 183019 - 182968
Alignment:
Q  23 agagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggggg 73  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  183019 agagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 29205 - 29143
Alignment:
Q  70 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 131  Q
    ||||||||||||||| | || || ||||||| |||||||| |||||||||||| |||||||||    
T  29205 ggggagttttattcagcgtaagggttgtgtaatcatgtgggtagtgaagggtttttaattttt 29143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University