View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_high_9 (Length: 392)
Name: NF3536_high_9
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_high_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 5951220 - 5950847
Alignment:
| Q |
19 |
gattcagctagggcttcaatgtcaataactaggaagcgaaatcctgacggtgatgctctctttctcaaagtgcagattgttgacaagaacggtacctgat |
118 |
Q |
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| T |
5951220 |
gattcagctagggcttcaatgtcaataactaggaagcgaaatcctgacggtgatgctctctttctcaaagtgcagattgttgacaagaacggtacctgat |
5951121 |
T |
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| Q |
119 |
gttttcttattactcaaagctatatatggttcgttgtagagaaaattttgttttaaatctctatgactacatgcttcgtcctatttaaccgcagcaacgt |
218 |
Q |
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| T |
5951120 |
gttttcttattactcaaagctatatctggttcgttgtagagaaaattttgttttaaatctctatgactacatgcttcgtcctatttaaccgcagcaacgt |
5951021 |
T |
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| Q |
219 |
ttcctattcttcttttcctgcaggttctgctaggaatgtatatttcccctttgacattttcactgacaccccaattgatgttgcgaaggagatggtaaaa |
318 |
Q |
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| T |
5951020 |
ttcctattcttcttttcctgcaggttctgctaggaatgtatatttcccctttgacattttcactgacaccccaattgatgttgcgaaggagatggtaaaa |
5950921 |
T |
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| Q |
319 |
gagttggacatcacaaattgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttcc |
392 |
Q |
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| T |
5950920 |
gagttggacatcacaaattgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttcc |
5950847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 386
Target Start/End: Complemental strand, 22396327 - 22396172
Alignment:
| Q |
230 |
cttttcctgcaggttctgctaggaatgtatatttc-ccctttgacattttcactgacaccccaattgatgttgcgaaggagatggtaaaagagttggaca |
328 |
Q |
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| T |
22396327 |
cttttcctgcaggttctactaggaatgtacatttttccctttgacagttttaccggcaccccaattgatgttgcaatggagatggtgaaagagttggaca |
22396228 |
T |
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| Q |
329 |
tcacaaattgggatccttctgaaattgctactatgattgaagcagagatatcaatgct |
386 |
Q |
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| T |
22396227 |
tcgcagtttgagagccttctgaagttgctaatatgattgaag--gagatatccatgct |
22396172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 31951155 - 31951027
Alignment:
| Q |
237 |
tgcaggttctgctaggaatgtatatttcccctttgacattttcactgacaccccaattgatgttgcgaaggagatggtaaaagagttggacatcacaaat |
336 |
Q |
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||||||||||| ||||||||||||||| || ||||| ||| ||||||| || || ||||||||||| | ||||||||||||||| ||||| || | || |
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| T |
31951155 |
tgcaggttctgttaggaatgtatattttccatttgatattctcactgatactcccattgatgttgcaatggagatggtaaaagaattggagatttctgat |
31951056 |
T |
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| Q |
337 |
tgggatccttctgaaattgctactatgat |
365 |
Q |
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| T |
31951055 |
tgggatccttttgatattgcaaatatgat |
31951027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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