View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_10 (Length: 413)
Name: NF3536_low_10
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 48763710 - 48764093
Alignment:
| Q |
18 |
cagccagagcatacttcttcttccaaaaccaaacctcattccgatgaacaacctcatcacaaaattttgaaacaggtcaaccaacttgcctaatttcatc |
117 |
Q |
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| T |
48763710 |
cagccagagcatacttcttcttccaaaaccaaacctcattccgatgaacaacctcatcacaaaattttgaaacaggtcaaccaacttgcctaatttcatc |
48763809 |
T |
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| Q |
118 |
ttcattccatgttccaattgttcattcatattattatattgttatgtatctattcgtgttgatcatatctctctaaattgcatctctacaacttgactag |
217 |
Q |
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| T |
48763810 |
ttcattccatgttccaattgttcattcatattattatattgttatgtatctattcgtgttgatcatatctctctaaattgcatctctacaacttgactag |
48763909 |
T |
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| Q |
218 |
ggttttggttgggattttttaggtggagtattatttcagtgatttaaacttggctaccaccgatcatttgatgaggttcatcaacaaagacgcagaaggt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48763910 |
ggttttggttgggattttttaggtggagtattatttcagcgatttaaacttggctaccaccgatcatttgatgaggttcatcaacaaagacccagaaggt |
48764009 |
T |
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| Q |
318 |
tttggtaagataataatattctcgctttctttctttttccatctgaattaccacggcctcaaacatttcattttactcactctg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48764010 |
tttggtaagataataatattctcgctttctttctttttccctctgaattaccacggcctcaaacatttcattctactcactctg |
48764093 |
T |
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