View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3536_low_13 (Length: 379)
Name: NF3536_low_13
Description: NF3536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3536_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 35157480 - 35157639
Alignment:
| Q |
203 |
catataacatctcatacaactatactagtagttcgttttacaggtcttcatagctaattaagatacattgtggtggtatcaccaacaggtttaacccaag |
302 |
Q |
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| T |
35157480 |
catataacatctcatacaactatactagtagttcgttttacaggtcttcatagctaattaagatacattgtggtggtatcaccaacaggtttaacccaag |
35157579 |
T |
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| Q |
303 |
ccgttgtccaaagatgttgatagagttgcgtcggtggatttttcaacatgagaacttttt |
362 |
Q |
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| T |
35157580 |
ccgttgtctaaagatgttgatagagttgcgtcggtggatttttcaacatgagaacttttt |
35157639 |
T |
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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 35157321 - 35157480
Alignment:
| Q |
9 |
tatctacatcagatcaagttgaaaaagacgtacatcatacacaaacatatcatagtctcnnnnnnntcatggagtacatcattgatactaaaattataat |
108 |
Q |
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| T |
35157321 |
tatctacatcagatcaagttgaaaaagacgcacatcatacacaaacatatcatagtctcaacaaa-tcatggagtacatcattgatactaaaattataat |
35157419 |
T |
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| Q |
109 |
tattcttgttacatgtacgtagtttgactataaaggttaagccaaatcttggggaataagc |
169 |
Q |
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| T |
35157420 |
tattcttgttacatgtacatagtttgactaaaaaggttaagccaaatcttggtaaataagc |
35157480 |
T |
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